Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17b17
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0769 + 36134298-36134356,36134740-36134919,36134975-361350...    30   1.2  

>03_06_0769 +
           36134298-36134356,36134740-36134919,36134975-36135007,
           36135008-36135128,36135227-36135266,36135811-36135863,
           36135937-36135998,36136354-36136506,36136949-36137160,
           36137480-36138972,36140560-36141483,36141734-36142043,
           36143818-36143874,36144114-36144167,36144452-36144510
          Length = 1269

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +1

Query: 55  SGKKLPSLVEVRNARCIAKPLPTNEYSAPTSFKKVEVRDDKSFKDLWRRTVDDRSSCK 228
           SGKK PS+V +RN    +K   ++E  + TS        D S  +  +R  + RSS K
Sbjct: 410 SGKKKPSVVVIRNINVTSKKHGSSESESQTSSDVASEDSDDSHTEYSKRK-NKRSSSK 466


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,751,735
Number of Sequences: 37544
Number of extensions: 273879
Number of successful extensions: 597
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)