Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17b14
         (523 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0316 + 4251465-4251590,4251664-4251719,4252973-4253087,425...    30   1.3  
02_05_1326 - 35712102-35712473,35712608-35712720,35712944-357148...    29   3.0  
12_02_1047 + 25666113-25666442,25666606-25666651,25667042-256671...    27   6.9  
04_01_0046 + 510721-510790,511048-511121,511459-511729,511865-51...    27   6.9  
03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13...    27   6.9  
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659...    27   6.9  
08_02_0210 + 14324539-14324609,14324735-14325740,14325838-143273...    27   9.1  
06_01_1178 + 10131844-10131993,10132103-10132171,10132446-101324...    27   9.1  
02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050     27   9.1  

>04_01_0316 +
           4251465-4251590,4251664-4251719,4252973-4253087,
           4253174-4253417,4254189-4254325,4255006-4255065,
           4255336-4255460,4256021-4256048,4256267-4256336,
           4256513-4256565,4256966-4257025,4257498-4257544,
           4257617-4257741,4258572-4258686,4258778-4258826,
           4260415-4260471,4261126-4261209,4261363-4261442,
           4262005-4262094,4262252-4262375
          Length = 614

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 73  VKIGEFKFGEDTFTLRYVLEQGNLQVKFVAKDIASS 180
           V+ G FK  ED   +   L++ N++ +FVA ++ +S
Sbjct: 332 VRCGNFKISEDYQAVNVTLKKDNMRTEFVAAEVDNS 367


>02_05_1326 - 35712102-35712473,35712608-35712720,35712944-35714857,
            35714942-35715135,35715237-35716786,35716946-35717049,
            35717258-35717399,35717692-35717910
          Length = 1535

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 193  NCKQAVIVNVDKKYKTTY-SESGSIPYTP 276
            N +QA I+  D KY  ++ ++ GS+PY P
Sbjct: 1270 NSEQAAIITEDVKYTESFLNKPGSLPYAP 1298


>12_02_1047 +
           25666113-25666442,25666606-25666651,25667042-25667130,
           25667291-25667493,25667807-25667949,25668286-25668332,
           25668794-25668870,25668952-25668981,25669068-25669163,
           25669489-25669591,25669959-25670041,25670204-25670326,
           25670465-25670576,25670791-25670898,25671006-25671593
          Length = 725

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -3

Query: 314 YSGSPCLTTLSG--AGVYGIDPD 252
           YS  PC +TLSG    V+ IDPD
Sbjct: 179 YSSKPCSSTLSGHKLRVHAIDPD 201


>04_01_0046 +
           510721-510790,511048-511121,511459-511729,511865-512243,
           512550-512771,513130-513259,514311-514367,514756-515046
          Length = 497

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 282 WSRGIWYRPRLAVRRFVFFVNINYHSLF 199
           WS G++Y P+ A  R +F   I   SLF
Sbjct: 290 WSLGVFYEPQYAKARMMFARLIKIFSLF 317


>03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-132773,
            132883-132996,133065-133193,133293-133469,133555-133746,
            134844-134981,135327-135559,135900-136003,136633-136727,
            136817-137053,137801-137922,138252-138354,138750-138826,
            138909-139017,139107-139253,139953-140000,140292-140492,
            140589-140738,140917-141002,141088-141193,141278-141373,
            141759-141911,142647-142819,142923-142986,144056-144193,
            144548-144595,144690-144836,144907-144968,146540-146645,
            147357-147461,147548-147679,147765-147974,148070-148171,
            148261-148398
          Length = 1729

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = +1

Query: 121  YVLEQGNLQVKF----VAKDIASSLKYVNCKQAVIV 216
            Y LE  N  +K     +A+ IA +L Y NCK+ + V
Sbjct: 1174 YALESDNNTIKSSVHSIARTIAGNLAYANCKEPLCV 1209


>02_02_0078 +
           6587491-6588021,6588160-6589151,6592430-6592607,
           6592635-6592794,6592992-6593158,6593246-6593869
          Length = 883

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 253 SGSIPYTPAPDNVVKQGDPLYLQPHTVLITKEGVIQLIMKSK 378
           +G +  T  P   ++QGDP  + P+  L+  EG+  ++ K +
Sbjct: 302 NGELTDTVVPSRGIRQGDP--ISPYLFLLCTEGLSCMLQKKE 341


>08_02_0210 +
           14324539-14324609,14324735-14325740,14325838-14327390,
           14327473-14327601,14328345-14328510
          Length = 974

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +1

Query: 121 YVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKK 231
           +V++     ++ + KD A+ +K+  C+Q V+   DK+
Sbjct: 59  WVVDYRQCTLESLEKDFAARVKWGRCQQVVVYGYDKR 95


>06_01_1178 +
           10131844-10131993,10132103-10132171,10132446-10132451,
           10132571-10132930,10133983-10134201,10134905-10135054
          Length = 317

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 220 VDKKYKTTYSESGSIPYTPAPDNVVKQGDPLYLQ-PHTVLITK 345
           +D++   +YS   S+ YTPAP   ++  D   ++ P +V + K
Sbjct: 50  MDRRSNPSYSRRASMVYTPAPAKKIEGSDLKSVKSPQSVSVKK 92


>02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050
          Length = 709

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -3

Query: 383 GSLLFII--SWITPSLVMSTVCGCRYSGSPCLTTLSG 279
           GSL  ++  S   P L  +TVC CR +GS   T+  G
Sbjct: 454 GSLFSLLHGSHQNPLLTRTTVCRCRQAGSSSRTSSKG 490


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,134,620
Number of Sequences: 37544
Number of extensions: 257277
Number of successful extensions: 667
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)