Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17b13
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 267 8e-73
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 159 3e-40
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 156 3e-39
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 132 5e-32
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 113 2e-26
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 112 5e-26
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 111 8e-26
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 35 0.011
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 32 0.078
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 29 0.42
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 27 2.9
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 26 3.9
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 26 5.1
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.1
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc... 25 6.8
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 6.8
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting... 25 6.8
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces... 25 9.0
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 267 bits (655), Expect = 8e-73
Identities = 136/205 (66%), Positives = 163/205 (79%), Gaps = 1/205 (0%)
Frame = +2
Query: 17 SERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSV 196
+++Y+FSLTTFSP+GKLVQIEYAL AV AG TSVGIKA++GVV+ATE K S L S+
Sbjct: 2 TDKYAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGASL 61
Query: 197 NKVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQ-YFLMYHEPIPTAQLVQRVATVMQEY 373
KV IT IGMVYSGMGPD+R+LV ++RK+AQ Y +Y+E PT LVQ +A+VMQE
Sbjct: 62 EKVCAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPTKILVQEIASVMQES 121
Query: 374 TQSGGVRPFGVSLLICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTED 553
TQSGGVRPFGVSLL+ G +E P L+Q DPSG YFAWKATA+GK+ KTFLEKRY ++
Sbjct: 122 TQSGGVRPFGVSLLVAGMDEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDE 181
Query: 554 LELDDAVHTAILTLKEGFEGQMTAD 628
LELDDAVHTAIL LKE FEG++T D
Sbjct: 182 LELDDAVHTAILALKETFEGELTED 206
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 159 bits (386), Expect = 3e-40
Identities = 76/194 (39%), Positives = 120/194 (61%), Gaps = 2/194 (1%)
Frame = +2
Query: 26 YSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKV 205
Y +L+ FSP G+L+Q+EY AV G T++ ++ + +VI E K+ L + + K+
Sbjct: 4 YDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKLQNVSNFQKI 63
Query: 206 EMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSG 385
M+ H+ + ++G+ D R+L+ +AR AQ + L +P+ L + VA V Q+YTQSG
Sbjct: 64 AMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSG 123
Query: 386 GVRPFGVSLLICGWEEG--RPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLE 559
GVRPFGVS LI G++ G P ++Q +P+G Y AWKATA+G+ + +LEK + E L
Sbjct: 124 GVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAREYLEKNWKEGLS 183
Query: 560 LDDAVHTAILTLKE 601
D+ +H A+ +L E
Sbjct: 184 RDETIHLAVSSLLE 197
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 156 bits (378), Expect = 3e-39
Identities = 79/197 (40%), Positives = 119/197 (60%), Gaps = 2/197 (1%)
Frame = +2
Query: 17 SERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKS-ILYDEHS 193
S Y T FSP G+L Q+EYAL A+ G ++GI A +G+V+A E K S +L E S
Sbjct: 2 SRSYDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEES 61
Query: 194 VNKVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEY 373
K+ I ++ +G+ D +L+ AR++ QQY ++E +P QLV+RV + Q Y
Sbjct: 62 AEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGY 121
Query: 374 TQSGGVRPFGVSLLICGWEEGRPY-LFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTE 550
TQ GG+RPFGVS L GW+ R Y LFQ +PSG Y +W+A ++G N + ++ + + Y +
Sbjct: 122 TQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQEYKD 181
Query: 551 DLELDDAVHTAILTLKE 601
D+ LD+A A+ L +
Sbjct: 182 DINLDEASAMAVKFLSK 198
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 132 bits (318), Expect = 5e-32
Identities = 69/211 (32%), Positives = 109/211 (51%), Gaps = 6/211 (2%)
Frame = +2
Query: 5 VIMASERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYD 184
+ M Y + TFSP G+L Q+EYA+ A+ G T++G+K + VV+ E + S L +
Sbjct: 1 MFMTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLME 60
Query: 185 EHSVNKVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVM 364
HSV K+ I HIG SG+ D R ++ AR Q + Y EP Q + +
Sbjct: 61 SHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLA 120
Query: 365 QEYTQSGG------VRPFGVSLLICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKT 526
+ + RPFGV+LLI G +E P L+ +PSG YF ++A A+G K+
Sbjct: 121 LRFGEGEDGEERIMSRPFGVALLIAGIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKS 180
Query: 527 FLEKRYTEDLELDDAVHTAILTLKEGFEGQM 619
L K + +D+ L++A + L++ E ++
Sbjct: 181 ELVKEFHKDMTLEEAEVLILKVLRQVMEEKL 211
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 113 bits (272), Expect = 2e-26
Identities = 61/179 (34%), Positives = 91/179 (50%)
Frame = +2
Query: 47 FSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEMITGHI 226
FSP G+L Q EYA AV T +GIK +GV++A E S L N++ + HI
Sbjct: 14 FSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLKPRVNNRIGSVDRHI 73
Query: 227 GMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGV 406
G+ +G PD + +V +AR A + Y PIP + R+ +Q +T VRPFGV
Sbjct: 74 GIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGV 133
Query: 407 SLLICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTA 583
+ ++ P+L+ +P+G Y+ + A GK + LEK L++ DAV A
Sbjct: 134 MSFVATYDSEGPHLYMVEPNGVYWGYNGAAAGKGRQVARNELEKLNFSSLKMKDAVKEA 192
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 112 bits (269), Expect = 5e-26
Identities = 60/199 (30%), Positives = 103/199 (51%), Gaps = 2/199 (1%)
Frame = +2
Query: 11 MASERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEH 190
M +Y TT+SP G+L Q+EYAL A+ G +VG+ + V+ ++ L
Sbjct: 1 MFRNQYDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEELSSYQ 60
Query: 191 SVNKVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQE 370
K+ I HIG+ +G+ PD R+L ++ A ++ PIP +L+ +VA Q
Sbjct: 61 K--KLIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQI 118
Query: 371 YTQSGGVRPFGVSLLICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYT- 547
TQ G RP+GV L+ G++E P+L + PSG + T+MG + +T++E+
Sbjct: 119 NTQEYGRRPYGVGFLVIGYDESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDT 178
Query: 548 -EDLELDDAVHTAILTLKE 601
D ++ + +A+ L++
Sbjct: 179 FPDSSREELILSALRALRD 197
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 111 bits (267), Expect = 8e-26
Identities = 71/192 (36%), Positives = 101/192 (52%), Gaps = 5/192 (2%)
Frame = +2
Query: 35 SLTTFSPSGKLVQIEYALAAVA-AGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEM 211
++T FSP G+L Q+EYA A AG TSVG+ N + ++ K L D +V V
Sbjct: 10 TITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVKHVFP 69
Query: 212 ITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGV 391
IT IG V +G D R V++AR A ++ P+P L +R+A + Q TQ +
Sbjct: 70 ITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQRAAM 129
Query: 392 RPFGVSL-LICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTED---LE 559
RP GV++ L+ +E P LF+ DP+G Y +KAT+ G +LEKR+ +D
Sbjct: 130 RPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEKRFKKDGIPSN 189
Query: 560 LDDAVHTAILTL 595
L D V T I L
Sbjct: 190 LTDTVETGIQAL 201
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 34.7 bits (76), Expect = 0.011
Identities = 41/181 (22%), Positives = 78/181 (43%), Gaps = 2/181 (1%)
Frame = +2
Query: 92 AVAAGGTSVGIKASNGVVIATENKHKS--ILYDEHSVNKVEMITGHIGMVYSGMGPDYRL 265
A + G T VG+ A + +V+ + + + I+ D++ K+ +I+ +I +G D
Sbjct: 31 ATSTGTTIVGVIAKDCIVLGADTRATAGPIIADKNC-KKLHLISPNIWCAGAGTAADTEF 89
Query: 266 LVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGWEEGRPY 445
+ + + + L Y P ++V + + Q + G G L++ G++ P+
Sbjct: 90 VTSMISSNIELHSL-YTNRKP--RVVTALTMLKQHLFRYQG--HIGAYLVLGGYDCKGPH 144
Query: 446 LFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGFEGQMTA 625
LF G+ A+G + LE +Y DLE H A+ +KE E +
Sbjct: 145 LFTIAAHGSSDKLPYVALGSGSLAAISVLETKYQPDLER----HEAMELVKEAIEAGIFN 200
Query: 626 D 628
D
Sbjct: 201 D 201
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 31.9 bits (69), Expect = 0.078
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +2
Query: 179 YDEHSVNKVEMITG----HIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQ 346
Y +H+VNK+++IT V D+ L T RK+ Y+ +Y P +L++
Sbjct: 1589 YSQHTVNKIQIITNITLDFDSFVLRTTVNDFLFLQTILRKIYNFYYALYDVPTTDVELLK 1648
Query: 347 R 349
R
Sbjct: 1649 R 1649
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 29.5 bits (63), Expect = 0.42
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 231 MPMWPVIISTLLTLCSSYSM 172
+P+WP+++S LL + SY M
Sbjct: 1508 LPLWPIVVSELLIIFKSYCM 1527
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -2
Query: 219 PVIISTLLTLCSSYSMLLCLFSVAITTPFDALMPTEVPPAA 97
P +++T CSS L L + P A +P + PP A
Sbjct: 265 PTLLNTYGNRCSSTDTLSSLSRLTSQDPLKASLPLQSPPLA 305
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 26.2 bits (55), Expect = 3.9
Identities = 7/30 (23%), Positives = 18/30 (60%)
Frame = -2
Query: 225 MWPVIISTLLTLCSSYSMLLCLFSVAITTP 136
+W +++ L + ++S ++C+F V + P
Sbjct: 2245 LWALLLGVLAWISRTHSWIICVFGVGLGAP 2274
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 25.8 bits (54), Expect = 5.1
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = -2
Query: 222 WPVIISTLLTLCSSYSMLLCLFSVAITTP 136
WP+ I + T+ S+ +LC++ ++ P
Sbjct: 33 WPIRIRIINTIIISFMTMLCMYGSSVFMP 61
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 155 ENKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYRLLVTQARK 286
EN+ + + + N +E +T HI Y G G + T +RK
Sbjct: 21 ENRKEEVSTLQDMANDLEKLTDHIEATYIGRGVPHDHAKTGSRK 64
>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
Ade2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 6.8
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Frame = +2
Query: 119 GIKASNGVVIATENKHKSILYDEH----SVNKVEMITGHIGMVYSGMGPDYRLLVTQARK 286
G+K + + I+ + H +++D H ++N+ E+ IG G+GP Y T+A +
Sbjct: 103 GLKCRDRIFIS-DRAH--LVFDYHQRADALNEAELGKQSIGTTGKGIGPAYS---TKATR 156
Query: 287 MAQQYFLMYHEPIPTAQLVQRVATVMQEY 373
+ +YH A+ + VA + + Y
Sbjct: 157 SGIRVHHLYHWAEFEARYRKNVADLQKRY 185
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 6.8
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -3
Query: 122 CRRKYHRRLRQLKHIR 75
C+R +HR+ Q++HIR
Sbjct: 9 CKRVFHRQEHQVRHIR 24
>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
complex subunit Apc4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 719
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -3
Query: 527 KFFHY*SSFPWLWLSMQNRLRRGHTGTGKDVLLPSHRSIEI 405
K F Y + W++ NR+ R +G + +L PS I I
Sbjct: 4 KSFKYPKKHKFEWINETNRVERVGSGLKRVILCPSMELIAI 44
>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 348
Score = 25.0 bits (52), Expect = 9.0
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +2
Query: 440 PYLFQCDPSGAYFAWKATAMG---KNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGFE 610
P++ QCD + W T MG N N T Y + D+A TA+ + F+
Sbjct: 227 PFITQCDTATGDNYWAGTYMGDFVSNITNVLTNSTGHYCTTQQEDNASLTAL--TRASFD 284
Query: 611 G 613
G
Sbjct: 285 G 285
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,767,267
Number of Sequences: 5004
Number of extensions: 58828
Number of successful extensions: 169
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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