Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17b13
(628 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 274 3e-74
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 153 1e-37
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 147 5e-36
Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical pr... 128 2e-30
Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical pr... 103 8e-23
AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome al... 97 7e-21
Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical pr... 90 1e-18
Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z81064-7|CAB02960.2| 382|Caenorhabditis elegans Hypothetical pr... 29 3.6
AL031621-7|CAE46665.1| 382|Caenorhabditis elegans Hypothetical ... 29 3.6
Z69385-9|CAA93425.4| 152|Caenorhabditis elegans Hypothetical pr... 28 4.8
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 28 4.8
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 28 4.8
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 28 4.8
U64862-2|AAZ32793.1| 372|Caenorhabditis elegans Lin-5 (five) in... 28 4.8
>Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical
protein D1054.2 protein.
Length = 231
Score = 274 bits (672), Expect = 3e-74
Identities = 134/199 (67%), Positives = 160/199 (80%), Gaps = 2/199 (1%)
Frame = +2
Query: 20 ERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVN 199
+ Y FSLTTFSPSGKL+QIEYAL AV G SVG++A +GVV+ATEN S+L D+
Sbjct: 3 DHYGFSLTTFSPSGKLMQIEYALNAVKNGQPSVGLRAKDGVVLATENVG-SVLTDDQP-- 59
Query: 200 KVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQ 379
KVE I+ HIG VYSGMGPD+R+LV +ARK+A +Y +MY E +PT QLV +A VMQEYTQ
Sbjct: 60 KVEQISKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQ 119
Query: 380 SGGVRPFGVSLLICGWEE--GRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTED 553
SGGVRPFG SLLI GW++ GRP LFQCDPSGAYFAWKATA+GKN N KTFLEKR++E
Sbjct: 120 SGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFSEA 179
Query: 554 LELDDAVHTAILTLKEGFE 610
LELDD +HTA+LTL+E F+
Sbjct: 180 LELDDGIHTALLTLRESFD 198
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 153 bits (370), Expect = 1e-37
Identities = 72/184 (39%), Positives = 115/184 (62%), Gaps = 1/184 (0%)
Frame = +2
Query: 23 RYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNK 202
RY ++T FSP G L Q+EYA AV G T+VG++ + +VI E K L D+ ++ K
Sbjct: 3 RYDRAITIFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDCIVIGVEKKSIPALQDDRTIRK 62
Query: 203 VEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQS 382
+ MI H+ + ++G+ D R+LV +AR Q Y L +P+ A + + +A Q +TQS
Sbjct: 63 IHMIDDHVMLAFAGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQS 122
Query: 383 GGVRPFGVSLLICGWE-EGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLE 559
G RPFG+S+LI G++ +G P LF+ +PSGAY+ + A A G+ + +LE++Y+E+
Sbjct: 123 PGRRPFGISMLIGGFDHDGTPRLFKTEPSGAYYEYVANATGRGEKPVREYLEEQYSEENT 182
Query: 560 LDDA 571
+D+A
Sbjct: 183 VDEA 186
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 147 bits (357), Expect = 5e-36
Identities = 79/206 (38%), Positives = 115/206 (55%), Gaps = 2/206 (0%)
Frame = +2
Query: 17 SERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKH-KSILYDEHS 193
+ RY T FSP G+L Q+EYA+ A++ GT +GI +S G+V+A E K+ +L D
Sbjct: 2 ARRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSVM 61
Query: 194 VNKVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEY 373
KV ++ +I +G+ D +L+ R A Y Y E +P QLVQ + Q Y
Sbjct: 62 TEKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRY 121
Query: 374 TQSGGVRPFGVSLLICGWEEGRPY-LFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTE 550
TQ GG RPFGVSLL GW++ Y L+Q DPSG Y WKAT +G N T L++ Y +
Sbjct: 122 TQIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEY-K 180
Query: 551 DLELDDAVHTAILTLKEGFEGQMTAD 628
L++A AI L + + ++ ++
Sbjct: 181 SPNLEEAKQLAIKVLWKTLDVKLASE 206
>Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical
protein F25H2.9 protein.
Length = 248
Score = 128 bits (310), Expect = 2e-30
Identities = 66/211 (31%), Positives = 116/211 (54%), Gaps = 4/211 (1%)
Frame = +2
Query: 5 VIMASERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYD 184
+ + Y + TFSP G+L Q+EYA+ AV G TS+GIK S GV++A E + S L
Sbjct: 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLMV 60
Query: 185 EHSVNKVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVM 364
++ K+ + HIG+ ++G+ D R LV +A+ AQ ++ Y+ I + Q VA +
Sbjct: 61 NDAIEKISKVDQHIGVTFAGLIADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLA 120
Query: 365 QEY----TQSGGVRPFGVSLLICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFL 532
++ ++ RPFGV++L G ++ LF DPSG + KA ++G + + L
Sbjct: 121 LQFGDDDVKASMSRPFGVAMLFAGVDQEGAKLFHLDPSGTFIDCKAKSIGAASDGAEQNL 180
Query: 533 EKRYTEDLELDDAVHTAILTLKEGFEGQMTA 625
+++Y + L + + + A+ LK+ E ++ +
Sbjct: 181 KEQYHDALTIKEGLKMALAILKQVMEEKLNS 211
>Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical
protein ZK945.2 protein.
Length = 250
Score = 103 bits (248), Expect = 8e-23
Identities = 59/187 (31%), Positives = 96/187 (51%), Gaps = 1/187 (0%)
Frame = +2
Query: 26 YSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKV 205
Y + +TFSP G++ Q+EYA AV GT + I+ NGVV+ + S LY +++ ++
Sbjct: 8 YDLAASTFSPDGRIFQVEYAQKAVDNAGTMIAIRGKNGVVVVADKLISSKLYTDNANPRM 67
Query: 206 EMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSG 385
+ ++G+ +G PD L A A ++ Y EP+P + VA + +T G
Sbjct: 68 FNVNDNVGVAVAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYIHIHT-LG 126
Query: 386 GVRPFGVSLLICGW-EEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLEL 562
RPFG W ++ LF +PSG + +KA A+GK+ K +EK E+L++
Sbjct: 127 ISRPFGAGAFFMSWNKQTGGRLFLVEPSGLNYEYKAWAVGKHRQAAKAEIEKLKIEELDV 186
Query: 563 DDAVHTA 583
+ V A
Sbjct: 187 NQLVKEA 193
>AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome alpha
subunit protein 6 protein.
Length = 260
Score = 97.5 bits (232), Expect = 7e-21
Identities = 54/176 (30%), Positives = 91/176 (51%)
Frame = +2
Query: 11 MASERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEH 190
M +Y +T +SP G+L Q+EYA+ A+ G +VGIK+ VI + ++ L H
Sbjct: 1 MFRNQYDGDVTVWSPQGRLHQVEYAVEAMKQGSATVGIKSETHAVIVALKRAQNDL-SSH 59
Query: 191 SVNKVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQE 370
KV I H G+ +G+ D R+L + + Y + +P +L + + +Q
Sbjct: 60 Q-KKVYEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQA 118
Query: 371 YTQSGGVRPFGVSLLICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEK 538
TQ G RPFGV +LI G+++ ++ Q DPS + T++G + +T+LE+
Sbjct: 119 NTQYYGRRPFGVGILIAGYDKDGAHIIQTDPSAEVVSMHGTSIGARSQSARTYLER 174
>Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical
protein C15H11.7 protein.
Length = 246
Score = 89.8 bits (213), Expect = 1e-18
Identities = 56/199 (28%), Positives = 102/199 (51%), Gaps = 4/199 (2%)
Frame = +2
Query: 14 ASERYSFSLTTFSPSGKLVQIEYALAAVAAGG-TSVGIKASNGVVIATENKHKSILYDEH 190
+S + +T FSP G++ Q+EYA A+ + T+V +K ++ VIA + + L
Sbjct: 5 SSAGFDRHITIFSPEGRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSLIVAD 64
Query: 191 SVNKVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQE 370
+V V I+ +G GM PD + + +A+ A + +P L +++A + Q
Sbjct: 65 TVTSVYQISQSVGCCAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQY 124
Query: 371 YTQSGGVRPFGVSLLICGWEEGR-PYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYT 547
YTQ+ +R G +LL +++ + P +++ DP+G Y K ++G +FLEK+
Sbjct: 125 YTQNAEMRSLGCALLFISYDDEKGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIK 184
Query: 548 EDLEL--DDAVHTAILTLK 598
+ EL +A+ AI L+
Sbjct: 185 KKSELTSTEAIELAIEALQ 203
>Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical
protein C47B2.4 protein.
Length = 277
Score = 43.2 bits (97), Expect = 2e-04
Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 3/175 (1%)
Frame = +2
Query: 98 AAGGTSVGIKASNGVVIATENKHKS--ILYDEHSVNKVEMITGHIGMVYSGMGPDYRLLV 271
+ G T V + G+V+ +++ + I+ D+H KV +T I +G D +
Sbjct: 44 STGTTIVAVAFKGGLVMGADSRATAGNIIADKHC-EKVHKLTESIYACGAGTAAD----L 98
Query: 272 TQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPF-GVSLLICGWEEGRPYL 448
Q KM + + T + + + + Q + + G LLI G + P+L
Sbjct: 99 DQVTKMLSGNLRLLE--LNTGRKARVITALRQAKQHLFNYQGYIGAYLLIGGVDPTGPHL 156
Query: 449 FQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGFEG 613
+ C +G A+ TA G T LE+ + D+ D+A L+ G G
Sbjct: 157 YMCSANGTTMAFPFTAQGSGSYAAITILERDFKVDMTKDEAEKLVQRALEAGMHG 211
>Z81064-7|CAB02960.2| 382|Caenorhabditis elegans Hypothetical
protein F16B12.8 protein.
Length = 382
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 158 NKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYR 262
N++ +L H +NK M ++ M++ M PDY+
Sbjct: 315 NRYMELLSLCHIINKTNMDLQYVSMMFQFMDPDYK 349
>AL031621-7|CAE46665.1| 382|Caenorhabditis elegans Hypothetical
protein F16B12.8 protein.
Length = 382
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 158 NKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYR 262
N++ +L H +NK M ++ M++ M PDY+
Sbjct: 315 NRYMELLSLCHIINKTNMDLQYVSMMFQFMDPDYK 349
>Z69385-9|CAA93425.4| 152|Caenorhabditis elegans Hypothetical
protein ZK593.2 protein.
Length = 152
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -2
Query: 177 SMLLCLF-SVAITTPFDALMPTEVPPAATAAKAYSICTNLPEG-LNVVREKLYLSDAMI 7
S LLC+F + I+ PF P+E P TAA+ ++ +G + + ++ D +
Sbjct: 4 SSLLCVFLCILISAPFTRSRPSEEHPMYTAARLTDEYKHILDGKIKLAESHIFTDDVTV 62
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 323 SAHDTSRSTAGPSSLLESPVDDSLDPFPSKP 231
S HD +RS+ G + P D+ +P P P
Sbjct: 2 STHDDTRSSGGGDGTIHIPSADAKEPTPESP 32
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 323 SAHDTSRSTAGPSSLLESPVDDSLDPFPSKP 231
S HD +RS+ G + P D+ +P P P
Sbjct: 110 STHDDTRSSGGGDGTIHIPSADAKEPTPESP 140
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 323 SAHDTSRSTAGPSSLLESPVDDSLDPFPSKP 231
S HD +RS+ G + P D+ +P P P
Sbjct: 110 STHDDTRSSGGGDGTIHIPSADAKEPTPESP 140
>U64862-2|AAZ32793.1| 372|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform e protein.
Length = 372
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 323 SAHDTSRSTAGPSSLLESPVDDSLDPFPSKP 231
S HD +RS+ G + P D+ +P P P
Sbjct: 110 STHDDTRSSGGGDGTIHIPSADAKEPTPESP 140
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,564,417
Number of Sequences: 27780
Number of extensions: 344976
Number of successful extensions: 1097
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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