Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17b08
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.27
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 29 0.63
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 28 1.1
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 1.9
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 27 2.5
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 3.3
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 26 4.4
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 26 4.4
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 26 5.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 5.8
SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme... 26 5.8
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 5.8
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 30.3 bits (65), Expect = 0.27
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Frame = +1
Query: 103 RASFDNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNDI 282
+A N +E ++ ND N N PT + VV ++E +ASN +++ + D
Sbjct: 24 QAKSKNSVAEDNVDRESNDGNNQVNEPTGNDNTQVVENTEDISASNVVSAEGAEASTGDA 83
Query: 283 MECLLKTTDNL---GEAVSSAYYSESLELPVAEQPSPSSAYNAESFEQSVGVNQPSAAGT 453
+T++N+ S A E +L V E ++ + E +++V S + +
Sbjct: 84 STQSPETSENVVKNSVDESVAEKPEKEDLAVIESEDKAAKPDGE-IKKNVETEVTSRSTS 142
Query: 454 KRKLDE 471
++ DE
Sbjct: 143 SQEKDE 148
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 29.1 bits (62), Expect = 0.63
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +1
Query: 166 NYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNDIMECLLKTTDNLGEAVSSAYYS 345
N NNP+P A+TVVS + + ++ S T D D E + LG SS S
Sbjct: 304 NMSNNPSPRVANTVVSPAP-------IPTIGSATIDKD-AEGFQRVLAMLGRQASSTTGS 355
Query: 346 ESLELPVAEQPSPS-SAYNAESFEQSVGVNQPSA 444
+ L Q + + S + S +Q G + PSA
Sbjct: 356 PKVALSQMPQVNVNPSNQDLASVKQPSGFSPPSA 389
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +1
Query: 142 KQQPNDYLNYYNNPTPDGA-DTVVSDSETAAASNFLASVNSLTDDNDIMECLLKTTDNLG 318
KQ DY NP G + ++ E + F+ +N + + + ++G
Sbjct: 117 KQNIPDYPTIVKNPMDLGTIEKKLTSYEYSVPQEFIDDMNLMFSNCFLYNGTESPVGSMG 176
Query: 319 EAVSSAYYSESLELPVAEQPS 381
+A+ + + +LP AEQP+
Sbjct: 177 KALQEVFERQLKQLPDAEQPA 197
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 1.9
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = +1
Query: 202 TVVSDSETAAASNFLASVNSLTD-DNDIMECLLKTTDNLGEAVSSAYYSESLELPVAEQP 378
T VSD T ++ SV + T D D + + +T L A S S + QP
Sbjct: 380 TSVSDEPTTITASGATSVTTTTKTDFDTVTTTIVSTSTLISASDSTSIIVSSYVSTVTQP 439
Query: 379 SPSSAYNAESFEQSVGVNQPSAA 447
+ + S V QP+A+
Sbjct: 440 ASTRVQTTTVSSISTSVKQPTAS 462
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 27.1 bits (57), Expect = 2.5
Identities = 25/86 (29%), Positives = 40/86 (46%)
Frame = +1
Query: 232 ASNFLASVNSLTDDNDIMECLLKTTDNLGEAVSSAYYSESLELPVAEQPSPSSAYNAESF 411
+ NF S S ND ++ LL+ T+ + SS +S S E + E S SS N E
Sbjct: 8 SKNFQFSEGSRESSNDELKVLLRDTETKEDEKSS--FSNSEEESIIENLSDSSV-NKEYA 64
Query: 412 EQSVGVNQPSAAGTKRKLDEYLDDSQ 489
+ S+ ++ A + L+ L D +
Sbjct: 65 KNSLKLS--DAVSESKYLNPLLKDKR 88
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.6 bits (56), Expect = 3.3
Identities = 26/102 (25%), Positives = 42/102 (41%)
Frame = +1
Query: 139 DKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNDIMECLLKTTDNLG 318
DKQ+ +N + A +S A + F A N ++++ND KT +
Sbjct: 389 DKQETAKPINKQVSSNETSAQEEPRESVAALRARF-AKAN-VSENND-PPTFPKTAAKIS 445
Query: 319 EAVSSAYYSESLELPVAEQPSPSSAYNAESFEQSVGVNQPSA 444
S A S + P P+P SA + +S+ +N P A
Sbjct: 446 SFNSKAGTSFAKPRPFTNNPNPISAPEKPTSGESLSLNPPPA 487
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +1
Query: 106 ASFDNGYSE-FCDKQQPNDYLN 168
AS+D+ E +CDK P DYLN
Sbjct: 348 ASYDSVDMETYCDKHTPPDYLN 369
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Frame = -3
Query: 193 HPAWD----CYNNSNSRWAVVYHKTLNSRCRTTLGTAS 92
H WD C+ + + +V Y KT N + TLGT+S
Sbjct: 702 HLVWDDRVICFRVTMNENSVWYGKTCNPQLHITLGTSS 739
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = -3
Query: 244 KSLKLLQSRCQILPCRLHPAWDCYNNSNSRWAVVYHKTLN 125
K ++ S ++ C + +WDC + WA + LN
Sbjct: 71 KDFRIRWSAIILIHCTISQSWDCLVEHGATWAKLLIALLN 110
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 43 QTTMTQINFNASYTSAPTPSRASF 114
Q + + +FNA+ APTPS A+F
Sbjct: 869 QPSYEEESFNATVIHAPTPSTATF 892
>SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme
Spe2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -3
Query: 232 LLQSRCQILPCRLHPAWDCYNNSNSRWAVVYHKTLNSRCRTTLGTAS 92
L Q++C++L D Y S S V HK + C TT AS
Sbjct: 61 LAQAQCKVLSVVNSEEIDAYLLSESSMFVFAHKIILKTCGTTTLLAS 107
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.8 bits (54), Expect = 5.8
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +1
Query: 181 PTPDGADTVVSDSETAAASNFLASVNSLTDDNDIMECLLKTTDNLGEAVS---SAYYSES 351
P D + + + AA + S+++L D+D E + T+N+ ++ A S++
Sbjct: 201 PFRDASTDLFDEHAHAAPMHSSISISTLLSDSDRYEPHVSLTENISPVMAPSIDARLSQT 260
Query: 352 L--ELPVAEQPSPSSA 393
+ LP A++ SP+S+
Sbjct: 261 ILRGLPPAQKLSPNSS 276
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.308 0.124 0.348
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,589,931
Number of Sequences: 5004
Number of extensions: 52143
Number of successful extensions: 152
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
- SilkBase 1999-2023 -