Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17b03
         (759 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U72618-1|AAC51137.1|  631|Homo sapiens hepatic nuclear factor 1-...    32   2.0  
M57732-1|AAA88077.1|  631|Homo sapiens hepatic nuclear factor 1 ...    32   2.0  
EF641294-1|ABR09270.1|  631|Homo sapiens transcription factor 1,...    32   2.0  
BC104910-1|AAI04911.1|  631|Homo sapiens transcription factor 1,...    32   2.0  
BC104908-1|AAI04909.1|  631|Homo sapiens transcription factor 1,...    32   2.0  

>U72618-1|AAC51137.1|  631|Homo sapiens hepatic nuclear factor
           1-alpha protein.
          Length = 631

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +1

Query: 28  TNLRRVNKLYPNQASFLADNTRLLTS---TPAGFTNVLNAPSVRNLGNNRYQPGYQLSNN 198
           TNL  +  L P +  F +D      S   TPA     L+ PS    G    QP ++LS +
Sbjct: 528 TNLSALASLTPTKQVFTSDTEASSESGLHTPASQATTLHVPSQDPAGIQHLQPAHRLSAS 587

Query: 199 RFVSTSDI 222
             VS+S +
Sbjct: 588 PTVSSSSL 595


>M57732-1|AAA88077.1|  631|Homo sapiens hepatic nuclear factor 1
           protein.
          Length = 631

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +1

Query: 28  TNLRRVNKLYPNQASFLADNTRLLTS---TPAGFTNVLNAPSVRNLGNNRYQPGYQLSNN 198
           TNL  +  L P +  F +D      S   TPA     L+ PS    G    QP ++LS +
Sbjct: 528 TNLSALASLTPTKQVFTSDTEASSESGLHTPASQATTLHVPSQDPAGIQHLQPAHRLSAS 587

Query: 199 RFVSTSDI 222
             VS+S +
Sbjct: 588 PTVSSSSL 595


>EF641294-1|ABR09270.1|  631|Homo sapiens transcription factor 1,
           hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin
           protein.
          Length = 631

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +1

Query: 28  TNLRRVNKLYPNQASFLADNTRLLTS---TPAGFTNVLNAPSVRNLGNNRYQPGYQLSNN 198
           TNL  +  L P +  F +D      S   TPA     L+ PS    G    QP ++LS +
Sbjct: 528 TNLSALASLTPTKQVFTSDTEASSESGLHTPASQATTLHVPSQDPAGIQHLQPAHRLSAS 587

Query: 199 RFVSTSDI 222
             VS+S +
Sbjct: 588 PTVSSSSL 595


>BC104910-1|AAI04911.1|  631|Homo sapiens transcription factor 1,
           hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin
           protein.
          Length = 631

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +1

Query: 28  TNLRRVNKLYPNQASFLADNTRLLTS---TPAGFTNVLNAPSVRNLGNNRYQPGYQLSNN 198
           TNL  +  L P +  F +D      S   TPA     L+ PS    G    QP ++LS +
Sbjct: 528 TNLSALASLTPTKQVFTSDTEASSESGLHTPASQATTLHVPSQDPAGIQHLQPAHRLSAS 587

Query: 199 RFVSTSDI 222
             VS+S +
Sbjct: 588 PTVSSSSL 595


>BC104908-1|AAI04909.1|  631|Homo sapiens transcription factor 1,
           hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin
           protein.
          Length = 631

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +1

Query: 28  TNLRRVNKLYPNQASFLADNTRLLTS---TPAGFTNVLNAPSVRNLGNNRYQPGYQLSNN 198
           TNL  +  L P +  F +D      S   TPA     L+ PS    G    QP ++LS +
Sbjct: 528 TNLSALASLTPTKQVFTSDTEASSESGLHTPASQATTLHVPSQDPAGIQHLQPAHRLSAS 587

Query: 199 RFVSTSDI 222
             VS+S +
Sbjct: 588 PTVSSSSL 595


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,073,299
Number of Sequences: 237096
Number of extensions: 2493679
Number of successful extensions: 9133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9133
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)