Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17b02
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    29   0.59 
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    27   2.4  
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr...    27   3.1  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    27   3.1  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    26   5.5  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    26   5.5  
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    25   7.3  
SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch...    25   7.3  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   7.3  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    25   7.3  
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c...    25   7.3  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    25   9.6  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   9.6  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    25   9.6  

>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
 Frame = +3

Query: 171 GANSNKYGIAAEKL-KVPLATIRNLVQALVYLILEGSKHNLSESDFRSSLALAGFSNDQQ 347
           G  + + G   E L   P+A IRN  ++  Y   EG  H +++S  R  +          
Sbjct: 721 GNETEQLGYIMEVLGPPPMALIRNSTRSKAYFDSEGKPHPITDSHNRLLV-------PST 773

Query: 348 DVMSKLYNTKKKELYEALQLLQRNDPK 428
              S+L NTK+    + L    + DPK
Sbjct: 774 RTFSQLLNTKQASFLDFLSKCLKWDPK 800


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 223  WPQYEILSKHSFI*YWREVSTIYQNLILDL 312
            W Q +++   +F  YWRE S +   L LD+
Sbjct: 1200 WFQVKMVMTRNFQSYWREPSILMSKLALDI 1229


>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 539

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 99  KLLHEHSVQVLIDFCKLAVEYINKGAN 179
           KLL+   V++++D C  A+ Y++ G N
Sbjct: 255 KLLYSEDVEIIVDAC-WAISYLSDGPN 280


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = +3

Query: 132 IDFCKLAVE-YINKGANSNKYGIAAEKLKVPLATIRNLVQALVYLILEGSKHNLSESDFR 308
           +  C LA + Y+   +N NK  I  E  + P  + RNL  +L        K +   +  R
Sbjct: 39  LQHCLLADQNYLLNNSNKNKGSIIEENTRKPFQSARNLQTSL--------KTHPESAITR 90

Query: 309 SSLALAGFSNDQQDVMSK-LYNTKKKEL 389
             L  AGF N    +  K L+ ++K+ +
Sbjct: 91  YGLGYAGFGNGWTALKPKILFPSQKRRV 118


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
 Frame = +3

Query: 84  QKDHLKLLHEHSVQVLIDFCKLAVEYIN---KGANSNKYGI-AAEKLKVPLATIRNLV-Q 248
           Q DH++ L EH   + ++   + V Y N    G   N Y + + E L+       N++  
Sbjct: 405 QLDHVEFLQEHLGPLEVELASVKVLYDNCFQAGIEENDYTMFSYEDLEHEFGITANIIAN 464

Query: 249 ALVYL---ILEGSKHNLSESD 302
            + YL   +LE  K  LS+ +
Sbjct: 465 KIKYLENELLEREKRTLSKQE 485


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -1

Query: 444 KQNLYILDHYVVTVVRLHIVPSSLYYTIYS*HLADHLKNLP 322
           K+ L ++D Y+     L +V ++L   ++   L D+L+N+P
Sbjct: 754 KEILKLVDAYISRAEDLELVGNTLIPALFEAVLLDYLQNVP 794


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 204 EKLKVPLATIRNLVQALVYLILEGSKHNLSESDFRSSLALAG 329
           E ++VPL+  +N +   + LI    K+N+ +  F SS  + G
Sbjct: 94  ESVQVPLSYYKNNISGTINLIECMKKYNVRDFVFSSSATVYG 135


>SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 232

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = +3

Query: 252 LVYLILEGSKHNLSESDFRSSLALAGFSNDQQDVMSKLYNTKKKELYEALQLLQRNDPKY 431
           L+ +ILE       +SD   ++           +MS++  T K+ LYE L+ L+ N PK+
Sbjct: 107 LLNVILEDQFATEKDSD-NGAVNYGALEAALNSLMSQV--TSKEILYEPLKDLEANYPKF 163

Query: 432 IDFAWRFEVQ 461
           +  A   E Q
Sbjct: 164 LKNAKETEKQ 173


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -2

Query: 656 VINIIWTLNCCLRFLYSCIHYIICSLLFSIYNGFLL 549
           ++ I++  +  L FL + + YII + +FS+   F+L
Sbjct: 741 ILGIMYFTDLILFFLDTYLWYIIFNTIFSVLRSFVL 776


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +1

Query: 136 TSANWLWNTLI 168
           TSANW WN LI
Sbjct: 378 TSANWFWNFLI 388


>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 351 VMSKLYNTKKKELYE 395
           VM+++YN K KELY+
Sbjct: 253 VMTRMYNQKNKELYK 267


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 281 LTSLQY*INECLDKISYC 228
           L+SLQY   EC+ K SYC
Sbjct: 458 LSSLQYYAYECVIKPSYC 475


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -3

Query: 589 FVAFCFLFIMVSFSCKAKLLGLIVTKSIVTTGFIPSFEFLEAI 461
           +++F F+ I  SFS    +L   ++KS+V+   +P  E+L  +
Sbjct: 41  YISFYFIIIS-SFSTHLNILYFNLSKSMVSFAQVPLEEYLNLL 82


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 520 VTKSIVTTGFIPSFEFLEAICTSNLQA-KSIYFGSLRCNSCKASYSSF 380
           + K ++++G++ ++E+L  I      A  ++    L  N  K +Y+S+
Sbjct: 30  IRKEMISSGYVNTYEYLNLILPPEENAITNLSMLELATNIAKGNYTSY 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,706,011
Number of Sequences: 5004
Number of extensions: 56976
Number of successful extensions: 199
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)