Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17a23
         (577 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC036112-1|AAH36112.1|  786|Homo sapiens suppressor of var1, 3-l...   126   4e-29
AL596223-2|CAH71499.1|  786|Homo sapiens suppressor of var1, 3-l...   126   4e-29
AF042169-1|AAB97370.1|  786|Homo sapiens putative ATP-dependent ...   126   4e-29
AF399504-1|AAK94989.1|  218|Homo sapiens olfactory receptor prot...    31   2.2  
AB065815-1|BAC06034.1|  313|Homo sapiens seven transmembrane hel...    31   2.2  

>BC036112-1|AAH36112.1|  786|Homo sapiens suppressor of var1, 3-like
           1 (S. cerevisiae) protein.
          Length = 786

 Score =  126 bits (305), Expect = 4e-29
 Identities = 59/118 (50%), Positives = 85/118 (72%), Gaps = 3/118 (2%)
 Frame = +3

Query: 231 SALFVPVPVKPN--SDDINIGEEFTGRLKKQDLLKILNKFYQKPEIRVLASENGLDDQLL 404
           ++LFVP+ VKP   S D ++G E T  L K ++ K+L+KFY++ EI+ L ++ GLD +L 
Sbjct: 61  TSLFVPLTVKPQGPSADGDVGAELTRPLDKNEVKKVLDKFYKRKEIQKLGADYGLDARLF 120

Query: 405 HQAFLSFRRHCLE-HDLPPDLHITISDILQGAGHVDDLFPYFLRHARRAFPHLDCLED 575
           HQAF+SFR + ++ H L  D+HI ++DI  GA H DDLFP+FLRHA++ FP LDC +D
Sbjct: 121 HQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADDLFPFFLRHAKQIFPVLDCKDD 178


>AL596223-2|CAH71499.1|  786|Homo sapiens suppressor of var1, 3-like
           1 (S. cerevisiae) protein.
          Length = 786

 Score =  126 bits (305), Expect = 4e-29
 Identities = 59/118 (50%), Positives = 85/118 (72%), Gaps = 3/118 (2%)
 Frame = +3

Query: 231 SALFVPVPVKPN--SDDINIGEEFTGRLKKQDLLKILNKFYQKPEIRVLASENGLDDQLL 404
           ++LFVP+ VKP   S D ++G E T  L K ++ K+L+KFY++ EI+ L ++ GLD +L 
Sbjct: 61  TSLFVPLTVKPQGPSADGDVGAELTRPLDKNEVKKVLDKFYKRKEIQKLGADYGLDARLF 120

Query: 405 HQAFLSFRRHCLE-HDLPPDLHITISDILQGAGHVDDLFPYFLRHARRAFPHLDCLED 575
           HQAF+SFR + ++ H L  D+HI ++DI  GA H DDLFP+FLRHA++ FP LDC +D
Sbjct: 121 HQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADDLFPFFLRHAKQIFPVLDCKDD 178


>AF042169-1|AAB97370.1|  786|Homo sapiens putative ATP-dependent
           mitochondrial RNA helicase protein.
          Length = 786

 Score =  126 bits (305), Expect = 4e-29
 Identities = 59/118 (50%), Positives = 85/118 (72%), Gaps = 3/118 (2%)
 Frame = +3

Query: 231 SALFVPVPVKPN--SDDINIGEEFTGRLKKQDLLKILNKFYQKPEIRVLASENGLDDQLL 404
           ++LFVP+ VKP   S D ++G E T  L K ++ K+L+KFY++ EI+ L ++ GLD +L 
Sbjct: 61  TSLFVPLTVKPQGPSADGDVGAELTRPLDKNEVKKVLDKFYKRKEIQKLGADYGLDARLF 120

Query: 405 HQAFLSFRRHCLE-HDLPPDLHITISDILQGAGHVDDLFPYFLRHARRAFPHLDCLED 575
           HQAF+SFR + ++ H L  D+HI ++DI  GA H DDLFP+FLRHA++ FP LDC +D
Sbjct: 121 HQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADDLFPFFLRHAKQIFPVLDCKDD 178


>AF399504-1|AAK94989.1|  218|Homo sapiens olfactory receptor
           protein.
          Length = 218

 Score = 31.5 bits (68), Expect = 2.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 411 AFLSFRRHCLEHDLPPDLHITISDI 485
           AF SF  HC  HD+P  +HI ++++
Sbjct: 187 AFFSFFTHCFGHDIPQYIHIFLANL 211


>AB065815-1|BAC06034.1|  313|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 313

 Score = 31.5 bits (68), Expect = 2.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 411 AFLSFRRHCLEHDLPPDLHITISDI 485
           AF SF  HC  HD+P  +HI ++++
Sbjct: 256 AFFSFFTHCFGHDIPQYIHIFLANL 280


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,033,320
Number of Sequences: 237096
Number of extensions: 1632012
Number of successful extensions: 3406
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3403
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5929224630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)