Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17a22
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   6.5  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   8.7  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    25   8.7  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   8.7  

>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 371 TPQDVSWHSSVEPLFRT*LYS*DREINDHFTGTV*SQY 484
           +P ++S HS+ +PL  T + S   +  D F+G+  S +
Sbjct: 80  SPPELSVHSAQQPLIPTSIASSSAQTGDTFSGSSQSNF 117


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 462 PVPSNRNTLSHSCTERHA 515
           P+PSN  TL  S  +RHA
Sbjct: 385 PIPSNVETLRSSLPQRHA 402


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/61 (22%), Positives = 27/61 (44%)
 Frame = +3

Query: 414 LEHNYTREIVRLMTTLPVPSNRNTLSHSCTERHAQLFLPPAATISVEGGDACAPEYPGTA 593
           L H+ T +       + +PS   T +++ +  H+ L  P A+T++     A     P  A
Sbjct: 401 LNHSVTGDGEAKQVVITMPSTHFTPANNSSANHSPLMAPNASTLNPSSLGASNLSQPSLA 460

Query: 594 S 596
           +
Sbjct: 461 N 461


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 260  LYFLHRRPVTFQKHVVLSQF*YYRPEVR*LTKIN 159
            LYF   R ++F+K + LS+  Y+   VR   K N
Sbjct: 1872 LYFALNREISFRKSLALSKSAYHNLLVRDSPKFN 1905


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,661
Number of Sequences: 5004
Number of extensions: 44608
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)