Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17a22
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0295 + 2217496-2218092,2218774-2218876,2219140-2219249,221...    30   1.6  
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336...    28   5.0  
08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692     28   6.7  
03_05_1070 + 30125131-30127029                                         28   6.7  
03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,352...    27   8.8  
02_01_0405 - 2952434-2955583                                           27   8.8  

>11_01_0295 +
           2217496-2218092,2218774-2218876,2219140-2219249,
           2219328-2219399,2219653-2219814,2220300-2220510,
           2220613-2220948,2221050-2221162
          Length = 567

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 607 ADLHDAVPGYSGAHASPPSTEIVAAGGKNNCAWRSVQE 494
           ADL D + G  G+H  P ST+    G +   A  + +E
Sbjct: 122 ADLKDLIAGLYGSHPQPSSTDAAEVGTQEGSAVAAAEE 159


>01_01_0453 -
           3361460-3361549,3361660-3361846,3362038-3362139,
           3362239-3362306,3362976-3363175,3363253-3363595,
           3363837-3363893,3364011-3364727,3364805-3365007,
           3365171-3365297
          Length = 697

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 414 LEHNYTREIVRLMTTLPVPSNRNTLS 491
           L+H  TR+++ L    PV +N+N LS
Sbjct: 147 LDHRQTRDLISLFLPAPVRANQNKLS 172


>08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692
          Length = 455

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 305 DLGVCCNYHRRDRVVCRKSKTP 370
           DL  C +YHRR +V    SKTP
Sbjct: 126 DLSKCRDYHRRHKVCEAHSKTP 147


>03_05_1070 + 30125131-30127029
          Length = 632

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -3

Query: 538 AAGGKNNCAWRSVQECDS-VLRLD 470
           A GG+   AWRS    DS VLRLD
Sbjct: 521 AGGGRGEAAWRSTATQDSQVLRLD 544


>03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,
            3523189-3523270,3523420-3523692,3523953-3524162,
            3524252-3524337,3525197-3525289,3526003-3526227,
            3526320-3526930,3529328-3529395,3529491-3529679,
            3529773-3529901,3530013-3532484
          Length = 1579

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -3

Query: 604  DLHDAVPGYSGAHASPPS-TEIVAAGGKNNCAWRSVQECDSVLRLDGTGKVVINLTISRV 428
            ++H+ + GY G      S  +++    K N  W++V+   + L+ +G GK   N  +  +
Sbjct: 1079 EVHNGL-GYPGTRPIASSDVDLIKPTVKVNGVWKNVEYTKATLKANGVGKNAENTKVPTI 1137

Query: 427  *LCSKQR 407
                K R
Sbjct: 1138 PSTQKSR 1144


>02_01_0405 - 2952434-2955583
          Length = 1049

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = +3

Query: 411 CLEHNYTREIVRLMTTLPVPSNRNTLSHSCTERHAQLFLPPAATISVEGGDACAPEYPGT 590
           C +H+    I  L   L +  N  +L+ SCTE+     L     +S +GG A A    GT
Sbjct: 8   CKKHSNKFPIPVLALALVLLINLASLTSSCTEQDRSSLLRFLRELSQDGGLA-ASWQDGT 66

Query: 591 ASCK 602
             CK
Sbjct: 67  DCCK 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,640,144
Number of Sequences: 37544
Number of extensions: 294218
Number of successful extensions: 798
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)