Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17a04
(304 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 29 0.11
SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr 1... 29 0.20
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 1.1
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 25 2.4
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 24 5.6
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra... 24 5.6
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr... 23 7.5
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 23 7.5
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 23 7.5
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 23 9.9
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 23 9.9
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 23 9.9
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 29.5 bits (63), Expect = 0.11
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 195 VNLFIYVCLYFLFKXEKGMTCEHLNNL 275
+NLF ++FL K KG+T E +N+L
Sbjct: 440 INLFSSFMIFFLAKETKGLTLEEVNDL 466
>SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr
1|||Manual
Length = 115
Score = 28.7 bits (61), Expect = 0.20
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +3
Query: 90 KTKFIFSYLFLWKTKHSIDFCLRIKFSLFTRXL*RVNLFIYV-CLYFLFKXEKGMTCEHL 266
KTK I + K IDF I+F L T L Y C++ + + +T L
Sbjct: 43 KTKTIIVVILSGKLSDLIDFKSYIEFVLKTNNSYSAILISYYRCIFIISLFHRPLTIHFL 102
Query: 267 NNLVH 281
NL H
Sbjct: 103 TNLTH 107
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.2 bits (55), Expect = 1.1
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3
Query: 60 LIPFHKNVSCKTKFIFSYLFLWKTKHSI 143
++ F +S K + FS+ F+W T H +
Sbjct: 3726 VVVFQHFISLKKSYSFSFNFIWSTFHQM 3753
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 25.0 bits (52), Expect = 2.4
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +3
Query: 51 LIQLIPFHKNVSCKTKFIFSYLFLWKTKHSIDF--CLRIKF 167
+ ++P +V F YL L+ KH+ DF CL + F
Sbjct: 718 IFSVVPLPFDVPVDNSVDFPYLRLFLEKHADDFFRCLEVAF 758
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 23.8 bits (49), Expect = 5.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 64 FHSIKMFPVRLSLFFPIYSYGKLNIASISAFA*NSLY 174
FH FP+RL +F PI L +++ +AF LY
Sbjct: 291 FHKYFTFPLRLLIFEPIL----LVVSTYTAFVYGILY 323
>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 369
Score = 23.8 bits (49), Expect = 5.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 190 EESIFLFTCVCIFYSKXKK 246
E+++F+F CI Y K K+
Sbjct: 51 EQNVFIFGMECIVYEKNKE 69
>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 23.4 bits (48), Expect = 7.5
Identities = 8/26 (30%), Positives = 13/26 (50%)
Frame = -1
Query: 298 NSFPSTWTRLFKCSHVIPFSXLNKKY 221
N TW F+CS ++ + +KY
Sbjct: 109 NKTHHTWGNYFRCSMIVAHKYILEKY 134
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 23.4 bits (48), Expect = 7.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 108 SYLFLWKTKHSIDFCLRIKFSLFTR 182
S LFL K +++D C++ S+ T+
Sbjct: 90 SVLFLEKVFNAVDICVKFHLSINTK 114
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 23.4 bits (48), Expect = 7.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 91 RLSLFFPIYSYGKLNIASI 147
+LS P Y + +LNIASI
Sbjct: 470 KLSALIPKYFFSELNIASI 488
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 23.0 bits (47), Expect = 9.9
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 48 NLIQLIPFHKNVSCKTKFIFSYLF 119
+L+ L+ H +SC + F ++Y F
Sbjct: 572 SLVHLLQNHSQLSCYSFFDYNYTF 595
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 23.0 bits (47), Expect = 9.9
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +3
Query: 195 VNLFIYVCLYFLFKXEKGMTCEHLNNLVHV 284
+++ I+ CLYFL G+ L + H+
Sbjct: 134 IDMRIHACLYFLRPVRNGVRPMDLEAMKHI 163
>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 128
Score = 23.0 bits (47), Expect = 9.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 64 FHSIKMFPVRLSLFFPIYSY 123
+HS +F VRL LF +SY
Sbjct: 78 YHSPLLFTVRLLLFSTYWSY 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,223,406
Number of Sequences: 5004
Number of extensions: 21794
Number of successful extensions: 49
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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