Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17a04
         (304 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0020 + 25070664-25070692,25070934-25071513,25071605-250718...    26   4.9  
06_03_0783 - 24546403-24546765,24547202-24547262,24547899-245480...    26   6.5  
09_02_0121 + 4502628-4502696,4503727-4503829,4504205-4504328,450...    25   8.6  
03_02_0686 + 10407800-10409501,10409611-10410284                       25   8.6  

>02_05_0020 +
           25070664-25070692,25070934-25071513,25071605-25071817,
           25071918-25072207,25072301-25072412,25072539-25072763,
           25072853-25073464
          Length = 686

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 84  SCKTKFIFSYLFLWKTKHSIDFCLRIKFSL-FTRXL*R--VNLFIYVCLYFLFK 236
           +C        LFL+ T    + C+ +K+SL FT  + R  ++LF    ++F F+
Sbjct: 106 ACLASLFVDPLFLYLTGTRQNMCIELKYSLAFTLSMIRSLLDLFYAAHIFFRFR 159


>06_03_0783 - 24546403-24546765,24547202-24547262,24547899-24548004,
            24548118-24551600,24553134-24553179
          Length = 1352

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 90   KTKFIFSYLFLWKTKHSIDFCLRIKFSL 173
            K K + S + +W T H +D C+  + SL
Sbjct: 933  KLKVLESIICMWHTDHRLDTCVTREISL 960


>09_02_0121 +
           4502628-4502696,4503727-4503829,4504205-4504328,
           4505963-4506306,4506383-4506487,4507907-4508288,
           4509173-4509437,4509936-4510094,4511150-4511201,
           4511266-4511462,4512865-4513350,4513797-4514093
          Length = 860

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 94  LSLFFPIYSYGKLNIASISAFA*NSLYLQGYCEESIFLFTCVCIFY 231
           LSLF  I+S G   + ++ A +  S+   G      FLFT +  FY
Sbjct: 538 LSLFLVIWSTGPRTLTTVGAVSTFSINSVGGFLLCTFLFTTMVRFY 583


>03_02_0686 + 10407800-10409501,10409611-10410284
          Length = 791

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 181 GYCEESIFLFTCVCIFYSKXKKE 249
           G C   + LF CV +F+ K K+E
Sbjct: 404 GICLLFLLLFCCVLLFWRKDKQE 426


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,866,961
Number of Sequences: 37544
Number of extensions: 106837
Number of successful extensions: 173
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)