Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17a04
         (304 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    28   0.068
AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ chann...    23   1.9  
AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium ch...    23   1.9  

>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
            channel alpha1 subunit protein.
          Length = 1893

 Score = 28.3 bits (60), Expect = 0.068
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 143  RFLPSHKILFIYKXIVKSQSFYLRVFVFFIQXGKRNDMRTFKQP 274
            R++P H+I +     V SQ F   +FV  +       M+ ++QP
Sbjct: 1157 RYIPKHRIQYKVWWFVTSQPFEYMIFVLIMINTITLSMKFYRQP 1200


>AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ channel
           protein.
          Length = 574

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 133 NIASISAFA*NSLYLQGYCEESIFLFTCVCIFY 231
           N++  S ++ N+  L+  CE  + L  C C+ Y
Sbjct: 354 NLSYYSVYSRNNCELE--CEAKLILENCGCVLY 384


>AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium
           channel protein.
          Length = 572

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 133 NIASISAFA*NSLYLQGYCEESIFLFTCVCIFY 231
           N++  S ++ N+  L+  CE  + L  C C+ Y
Sbjct: 354 NLSYYSVYSRNNCELE--CEAKLILENCGCVLY 384


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 305,313
Number of Sequences: 2352
Number of extensions: 4962
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 55
effective length of database: 434,619
effective search space used: 19557855
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)