Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17a04
         (304 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    29   2.7  
BC126225-1|AAI26226.1| 1297|Homo sapiens PDS5, regulator of cohe...    28   4.7  
BC114218-1|AAI14219.1| 1337|Homo sapiens PDS5A protein protein.        28   4.7  
BC041361-1|AAH41361.1|  600|Homo sapiens PDS5A protein protein.        28   4.7  
AY550968-1|AAT52214.1|  600|Homo sapiens cell proliferation-indu...    28   4.7  
AK098331-1|BAC05286.1|  600|Homo sapiens AS3) mRNA.  protein.          28   4.7  
AF294791-1|AAM82347.1| 1297|Homo sapiens SCC-112 protein.              28   4.7  

>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 99  FIFSYLFLWKTKHSIDFC-LRIKFSLFTRXL*RVNLFIYVCLY 224
           FIF Y+F++   +   +  L I F +FT     + ++IY+CLY
Sbjct: 16  FIFIYIFIYIYIYVYVYIYLYIYFYIFTYIYLYIFIYIYICLY 58


>BC126225-1|AAI26226.1| 1297|Homo sapiens PDS5, regulator of
           cohesion maintenance, homolog A (S. cerevisiae) protein.
          Length = 1297

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 51  LIQLIPFHKNVSCKTKFIFSYLFLWKTKHSIDFCL 155
           LI LIP HKN++ K  F  + + L +T  +I+ C+
Sbjct: 170 LINLIPAHKNLN-KQSFDLAKVLLKRTVQTIEACI 203


>BC114218-1|AAI14219.1| 1337|Homo sapiens PDS5A protein protein.
          Length = 1337

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 51  LIQLIPFHKNVSCKTKFIFSYLFLWKTKHSIDFCL 155
           LI LIP HKN++ K  F  + + L +T  +I+ C+
Sbjct: 210 LINLIPAHKNLN-KQSFDLAKVLLKRTVQTIEACI 243


>BC041361-1|AAH41361.1|  600|Homo sapiens PDS5A protein protein.
          Length = 600

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 51  LIQLIPFHKNVSCKTKFIFSYLFLWKTKHSIDFCL 155
           LI LIP HKN++ K  F  + + L +T  +I+ C+
Sbjct: 210 LINLIPAHKNLN-KQSFDLAKVLLKRTVQTIEACI 243


>AY550968-1|AAT52214.1|  600|Homo sapiens cell
           proliferation-inducing protein 54 protein.
          Length = 600

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 51  LIQLIPFHKNVSCKTKFIFSYLFLWKTKHSIDFCL 155
           LI LIP HKN++ K  F  + + L +T  +I+ C+
Sbjct: 210 LINLIPAHKNLN-KQSFDLAKVLLKRTVQTIEACI 243


>AK098331-1|BAC05286.1|  600|Homo sapiens AS3) mRNA.  protein.
          Length = 600

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 51  LIQLIPFHKNVSCKTKFIFSYLFLWKTKHSIDFCL 155
           LI LIP HKN++ K  F  + + L +T  +I+ C+
Sbjct: 210 LINLIPAHKNLN-KQSFDLAKVLLKRTVQTIEACI 243


>AF294791-1|AAM82347.1| 1297|Homo sapiens SCC-112 protein.
          Length = 1297

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 51  LIQLIPFHKNVSCKTKFIFSYLFLWKTKHSIDFCL 155
           LI LIP HKN++ K  F  + + L +T  +I+ C+
Sbjct: 170 LINLIPAHKNLN-KQSFDLAKVLLKRTVQTIEACI 203


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,457,301
Number of Sequences: 237096
Number of extensions: 700873
Number of successful extensions: 1071
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 76,859,062
effective HSP length: 77
effective length of database: 58,602,670
effective search space used: 1347861410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)