Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17a04
         (304 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23179-2|AAK68207.1|  345|Caenorhabditis elegans Serpentine rece...    30   0.28 
AF016686-12|AAB66234.1|  723|Caenorhabditis elegans Hypothetical...    27   2.6  
U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical p...    27   3.4  
Z82073-3|CAB04926.1|  631|Caenorhabditis elegans Hypothetical pr...    25   7.9  

>U23179-2|AAK68207.1|  345|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 5 protein.
          Length = 345

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +3

Query: 54  IQLIPFHKNVSCKTKFIFSYLFLWKTKHSIDF---CLRIKFSLFTRXL*RVNLFIYVC 218
           + L+PFH N+ C     FS +FL+      DF   CL I F + T+    ++  +Y C
Sbjct: 47  VLLLPFHGNLKCLLITYFSSIFLYALVLCFDFSYQCL-IPFIVTTKCSLIIDQTLYKC 103


>AF016686-12|AAB66234.1|  723|Caenorhabditis elegans Hypothetical
           protein R07C3.4 protein.
          Length = 723

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 179 KXIVKSQSFYLRVFVFFIQXGKRNDMRTFKQPGPRT 286
           K + +S +F L  F  F++ GK+++ R    P P T
Sbjct: 224 KAMAESNNFQLWSFDEFVELGKKHEHRPHAPPTPET 259


>U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical
           protein F20D6.12 protein.
          Length = 513

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +3

Query: 105 FSYLFLWKTKHSIDFCLRIKFSLFTRXL*RVNLFIYVCLYFLFKXEKGMTCEHLNNLV 278
           F  +F +       +CL I  S FT     + +FI+ CL  L     G+   HL N++
Sbjct: 362 FFLIFYYMGTSDCIYCLTIISSEFTHNTQLLPIFIFTCLVVL--SYYGVFFNHLGNIL 417


>Z82073-3|CAB04926.1|  631|Caenorhabditis elegans Hypothetical
           protein W06D12.5 protein.
          Length = 631

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 234 KXEKGMTCEHLNNLVHVLGK 293
           + EK  T +H+NNL H+L +
Sbjct: 240 RHEKAKTLDHVNNLEHLLDR 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,639,899
Number of Sequences: 27780
Number of extensions: 118993
Number of successful extensions: 272
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)