Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17a04
         (304 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              22   1.9  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   3.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   3.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   7.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   7.7  

>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 48 YRNFTIIVSLIVC 10
          Y N TI++ LI+C
Sbjct: 3  YNNLTIVIILIMC 15


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 64  FHSIKMFPVRLSLFFPIYSYGKLNI 138
           F + + + +  +LF+P   YG  NI
Sbjct: 213 FRNSRSWRITNNLFYPYPPYGTFNI 237


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 304 CHNSFPSTWTRLFKCSH 254
           CH+    T +RL +C H
Sbjct: 136 CHSGSSLTKSRLMRCLH 152


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -3

Query: 284 YVDQVV*MFACHSFFXFE*KIQTHVNKKIDSS 189
           Y ++V     CH  F  +  ++ H+    DSS
Sbjct: 255 YGEKVYKCTLCHETFGSKKTMELHIKTHSDSS 286


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 162 KFSLFTRXL*RVNLFIYVCL 221
           K+ LFT  L  ++++I VC+
Sbjct: 314 KYLLFTMILVTLSIWITVCV 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,450
Number of Sequences: 438
Number of extensions: 1376
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)