Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16p18
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1474 - 26766078-26766536,26766634-26766885,26767201-267674...    29   2.6  
04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680     29   2.6  
04_03_0643 + 18328807-18331969,18332560-18332627                       29   2.6  
03_04_0088 + 17209568-17209876,17209966-17210595,17210846-172110...    29   3.4  

>07_03_1474 -
           26766078-26766536,26766634-26766885,26767201-26767401,
           26767986-26768156,26768249-26768433,26768526-26768851,
           26769430-26770631
          Length = 931

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 369 RVDTRSDHELYVPVRGRP-HRRDALWKHYLEDRSEPACALDTR*KHI*RHLQY 524
           R+ TR+       +R  P  + D +W  YL   S PAC ++T  +   R+LQY
Sbjct: 137 RLLTRARRAFDRALRALPVTQHDRIWPLYLRLASLPACPVETSLRVFRRYLQY 189


>04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680
          Length = 936

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 555 PSFIFCVYHVRIVNAVICAFSVCP 484
           PS + C+YHV+ +NA  C F   P
Sbjct: 668 PSSVSCLYHVQTINAKGCVFKRYP 691


>04_03_0643 + 18328807-18331969,18332560-18332627
          Length = 1076

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 555 PSFIFCVYHVRIVNAVICAFSVCP 484
           PS + C+YHV+ +NA  C F   P
Sbjct: 668 PSSVSCLYHVQTINAKGCVFKRYP 691


>03_04_0088 +
           17209568-17209876,17209966-17210595,17210846-17211019,
           17211434-17211515,17212091-17212278,17212993-17213152,
           17213441-17213763,17213860-17213967,17214116-17214189,
           17214249-17214361,17214461-17214741
          Length = 813

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +1

Query: 448 ITWKIDLNQPAHWTHAESTYDGIYNTYVIDTEYKTWALLLHCAEQT 585
           +TW  DL  P+ W   E         + IDT +  W L+    E+T
Sbjct: 673 LTWACDLVDPSRWHGEEPRPVRAATQWAIDTAFDLWQLIHPEKERT 718


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,771,371
Number of Sequences: 37544
Number of extensions: 395394
Number of successful extensions: 1069
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)