Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16p18
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    27   0.12 
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    27   0.12 
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    27   0.12 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   0.66 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.2  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 360 WYNRVDTRSDHELYVPVRGRPHRRDALWKHYLEDRSEP 473
           ++N +DT+  ++L  PV G   R +    HY  D+S+P
Sbjct: 115 YFNLIDTKC-YKLEHPVTGCGERTEGRCLHYTVDKSKP 151


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 360 WYNRVDTRSDHELYVPVRGRPHRRDALWKHYLEDRSEP 473
           ++N +DT+  ++L  PV G   R +    HY  D+S+P
Sbjct: 120 YFNLIDTKC-YKLEHPVTGCGERTEGRCLHYTVDKSKP 156


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 360 WYNRVDTRSDHELYVPVRGRPHRRDALWKHYLEDRSEP 473
           ++N +DT+  ++L  PV G   R +    HY  D+S+P
Sbjct: 120 YFNLIDTKC-YKLEHPVTGCGERTEGRCLHYTVDKSKP 156


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 560 YCCTARSRRKALVTSLHSFCPGQ 628
           Y C +R  R+A V  L + CPG+
Sbjct: 390 YACWSRDFRRAFVRILCACCPGR 412


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 388 TMNFTYRFADDPIGETLFGN 447
           T+NFTY  A  P G+  FGN
Sbjct: 473 TINFTYSLALSPDGQ--FGN 490


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 634 VWLSWTERMQ*GNERLPSAPRSAAVTPKFYILCLS 530
           +W+SW E M+  +E L  A  S       ++ C S
Sbjct: 387 LWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSS 421


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 671 SLSRRYAITFXCSLVVLDRTNAVR*RAPSVCSAQ 570
           S SRRY+  F  S+V     ++ R  +PS+ ++Q
Sbjct: 19  SRSRRYSKRFSSSIVDRRSPSSSRSPSPSLLTSQ 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,061
Number of Sequences: 438
Number of extensions: 4569
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)