Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16p16
         (366 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    25   2.8  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    25   3.7  
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac...    25   3.7  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   3.7  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    24   6.4  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    24   6.4  
SPCC16A11.07 |coq10||ubiquinone binding protein Coq10|Schizosacc...    24   6.4  

>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 279 LDYLSTEVSLVVDIWITFVHCPLHISTFFSLYSQN 175
           +D LST    +  +W+ + H  +H+ T   +Y Q+
Sbjct: 459 MDELSTSEKRI--LWLCYEHVAMHVETTLYIYVQS 491


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 72  AFSLQSSHIVEGSPSPLRICYNNRHVVLSNVAVNGFDC 185
           A  L   HI+ G+   L   YN     L+N   NGF+C
Sbjct: 212 ATGLHGIHIIVGTILLLVATYNIYTYHLTNTHHNGFEC 249


>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -1

Query: 204 STFFSLYSQNRLLRHCLEQHAGYYNRFAREMDSL--LQYVMIAEKRQRLLIISKRNRM 37
           S F+S  S N +L+   + +A        ++  L  +Q+V+I E+   L +I K+NR+
Sbjct: 40  SPFYSHKSNNEMLKMQSQFNALDLGDLNSQLKRLTGIQFVIIHERPPFLWVIQKQNRL 97


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 11   LIFQGVMSVMRFLFEIISNLCL 76
            L F  V ++ RF+F+I++ LCL
Sbjct: 1749 LAFCAVTAIHRFIFKILTLLCL 1770


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 302 VKKLLFIYWTIC 267
           +KKLL+ YW +C
Sbjct: 68  LKKLLYYYWEVC 79


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 165 RHCLEQHAGYYNRFA-REMDSLLQYVMIAEKRQRL 64
           R  LE++  YYNRFA  E  + L + +     +R+
Sbjct: 353 RASLERYLHYYNRFANHEQSAKLDHELYEHTHKRM 387


>SPCC16A11.07 |coq10||ubiquinone binding protein
           Coq10|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 164

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +2

Query: 44  FLFEIISNLCLFSAIITYCRRESIS 118
           FLF +ISN+  +   + +C++  ++
Sbjct: 25  FLFSLISNVNEYERFVPFCQKSKVT 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,497,024
Number of Sequences: 5004
Number of extensions: 29275
Number of successful extensions: 69
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)