Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16p16
         (366 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    24   0.65 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    24   0.65 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    24   0.65 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    24   0.65 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    24   0.65 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    24   0.65 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    24   0.65 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    24   0.65 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   0.65 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   1.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   1.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   2.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   3.4  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   6.0  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 0.65
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 317 YFFVSVKKLLFIYWTICLLR 258
           Y   S  K+LF+ W  CLLR
Sbjct: 289 YVMPSWIKMLFLQWLPCLLR 308


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 0.65
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 317 YFFVSVKKLLFIYWTICLLR 258
           Y   S  K+LF+ W  CLLR
Sbjct: 289 YVMPSWIKMLFLQWLPCLLR 308


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 0.65
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 317 YFFVSVKKLLFIYWTICLLR 258
           Y   S  K+LF+ W  CLLR
Sbjct: 289 YVMPSWIKMLFLQWLPCLLR 308


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 0.65
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 317 YFFVSVKKLLFIYWTICLLR 258
           Y   S  K+LF+ W  CLLR
Sbjct: 289 YVMPSWIKMLFLQWLPCLLR 308


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 0.65
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 317 YFFVSVKKLLFIYWTICLLR 258
           Y   S  K+LF+ W  CLLR
Sbjct: 289 YVMPSWIKMLFLQWLPCLLR 308


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 0.65
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 317 YFFVSVKKLLFIYWTICLLR 258
           Y   S  K+LF+ W  CLLR
Sbjct: 289 YVMPSWIKMLFLQWLPCLLR 308


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.8 bits (49), Expect = 0.65
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 317 YFFVSVKKLLFIYWTICLLR 258
           Y   S  K+LF+ W  CLLR
Sbjct: 357 YVMPSWIKMLFLQWLPCLLR 376


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.8 bits (49), Expect = 0.65
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 317 YFFVSVKKLLFIYWTICLLR 258
           Y   S  K+LF+ W  CLLR
Sbjct: 357 YVMPSWIKMLFLQWLPCLLR 376


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 0.65
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 296 KLLFIYWTICLLR 258
           K++F+YW  C+LR
Sbjct: 333 KVVFLYWLPCILR 345


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 242 TFGSLLFIVLCT*APFFLYTVKTVYC 165
           T G ++ + L    PFF   + T YC
Sbjct: 273 TVGVIMGVFLICWVPFFCVNIVTSYC 298


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 255 SLVVDIWITFVH-CPLHISTFFSLYSQNRLLRHCL 154
           +L+ DI+ T  + C + +STFF    Q  +   C+
Sbjct: 119 NLLEDIYETLSYDCDVDVSTFFDQLGQEVIYTACV 153



 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 82  CNHHIL*KGVHLPCESVIITGML 150
           C+HH+  KG  +     I TGM+
Sbjct: 570 CSHHLTHKGKPIRMRIGIHTGMV 592


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 6/27 (22%), Positives = 16/27 (59%)
 Frame = -1

Query: 306 VCEKVTLYLLDYLSTEVSLVVDIWITF 226
           +  ++  +++DY    + +VV  W++F
Sbjct: 227 LAREMGFFMMDYYIPSILIVVISWVSF 253


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 323 LSYFFVSVKKLLFIYWTI 270
           L  F++ +  +LF YW I
Sbjct: 253 LGSFYIPMLVMLFFYWRI 270


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 67  IAYYFKKKSHDAHNSLKDQ 11
           I YY   K HDA+  L  +
Sbjct: 71  IGYYKLNKIHDAYKDLNQR 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,796
Number of Sequences: 438
Number of extensions: 2048
Number of successful extensions: 19
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)