Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16p13
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|... 95 6e-21
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe... 52 6e-08
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 28 1.1
SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 5.8
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 5.8
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 26 5.8
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 26 5.8
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 25 7.7
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy... 25 7.7
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 25 7.7
>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 156
Score = 95.5 bits (227), Expect = 6e-21
Identities = 56/155 (36%), Positives = 85/155 (54%), Gaps = 3/155 (1%)
Frame = +1
Query: 181 IKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKL 360
+ VG LP L+E+ P V E + K ++ VPGAFTP CS + +PGY+ N +
Sbjct: 2 VAVGSTLPKVTLWENKPEEVV---EFPSQGKFIIVGVPGAFTPPCS-SQVPGYIANEKQF 57
Query: 361 KSDGVAEIVCVSVNDPYVMAAWGAQHN--TKGKVRMLADPSGNFIKALDLGTNLPP-LGG 531
+ G++ I V+VND +V AW + + V +AD +G F KA D G + LG
Sbjct: 58 AAKGISGIYVVAVNDVFVTKAWKKSFDGGEQSGVHFVADWNGEFTKAFDAGFDASGLLGP 117
Query: 532 FRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 636
RSKR++ V+ + KV + +E + T + S ADK+
Sbjct: 118 LRSKRYAAVVENGKVVKVFIENEVTDVDISSADKV 152
>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 195
Score = 52.4 bits (120), Expect = 6e-08
Identities = 34/106 (32%), Positives = 55/106 (51%)
Frame = +1
Query: 181 IKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKL 360
I+VGD +P L D + + ++TA K +V+FA P A TPGC+K G+ N K+
Sbjct: 46 IQVGDVIPDITL-PDEDGTSIRLRDITANKGLVIFAYPKASTPGCTKQGC-GFRDNYPKI 103
Query: 361 KSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKAL 498
++ E++ +S + A+ + N +L+DP G IK L
Sbjct: 104 QASDY-EVLGLSFDTSKAQKAFKDKQNF--PYHLLSDPKGELIKKL 146
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 235 NKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVA--EIVCVSVND 405
NK + EL KV++ + C K P Y AD+L+ DG++ E+ C D
Sbjct: 28 NKEGLNELITADKVLMVKFYAPWCGHC-KALAPEYESAADELEKDGISLVEVDCTEEGD 85
>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 242
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = -2
Query: 75 VEVFTMVVTLLIIYFVISIV 16
V +FT V+T++I+YF S++
Sbjct: 117 VLIFTYVMTVIIVYFSFSLI 136
>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 238
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = -2
Query: 75 VEVFTMVVTLLIIYFVISIV 16
V +FT V+T++I+YF S++
Sbjct: 117 VLIFTYVMTVIIVYFSFSLI 136
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.8 bits (54), Expect = 5.8
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = -2
Query: 375 NSIRFQFICVLYVSRQVCFRASRG 304
NSI+ F+C++Y+S+ + ++ G
Sbjct: 522 NSIKSPFLCLIYISKDMEYKLLHG 545
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +2
Query: 491 RLWTWAPICRRSGVSAPKGSPWSSLTARFK 580
RLW P C +G +G W S A+ K
Sbjct: 155 RLWNVQPTCALTGDGLLEGLAWLSQNAKLK 184
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +1
Query: 334 GYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQH-----NTKGKVRMLADPS 477
GY+ +++ L +G + + V++P A W +H N + + +L D S
Sbjct: 329 GYLHSSELLYPEGTEQQIISLVDEPNQNALWIIEHEHSQDNNRSNIELLKDGS 381
>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 436
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 66 KLLPSNVSHRVFDYPWHYRIRQS 134
KLLP N + + WH R+R++
Sbjct: 67 KLLPQNYNFEIHKTIWHIRLRKA 89
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 509 PICRRSGVSAPKGSPWSSL 565
P+ S +APK SPW SL
Sbjct: 612 PVTSGSQTTAPKPSPWKSL 630
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,996
Number of Sequences: 5004
Number of extensions: 60994
Number of successful extensions: 173
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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