Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16p13
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048 131 4e-31
06_03_0811 + 24830496-24831194 130 1e-30
02_01_0691 - 5167260-5167937 126 1e-29
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911... 107 1e-23
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 45 5e-05
11_03_0128 - 10437407-10438049,10438097-10438272 32 0.48
08_02_1402 - 26786011-26786128,26786263-26786516,26787505-267877... 32 0.48
06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518 31 0.64
02_05_0541 - 29866396-29866881 31 0.84
09_06_0228 + 21706118-21706252,21706327-21706406,21706742-217068... 31 1.1
08_01_0627 + 5451140-5451839,5452635-5452662,5452730-5452786,545... 30 2.0
06_01_0671 - 4899611-4899829,4900870-4901448 30 2.0
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 29 2.6
06_01_0861 + 6527279-6527582,6527619-6527719,6527817-6528042,652... 29 2.6
03_06_0733 + 35825541-35826052,35826728-35826871,35828638-358287... 29 2.6
01_06_0928 + 33085403-33089224 29 4.5
06_03_1406 - 29949367-29949556,29949753-29949837,29950625-299507... 28 6.0
08_02_1430 - 27048055-27048408,27049674-27049841,27049927-270500... 28 7.9
06_01_0145 + 1092764-1093351 28 7.9
01_01_0933 - 7368672-7368785,7368860-7368895,7369581-7369715,736... 28 7.9
>01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048
Length = 162
Score = 131 bits (317), Expect = 4e-31
Identities = 69/148 (46%), Positives = 94/148 (63%), Gaps = 4/148 (2%)
Frame = +1
Query: 172 MAPIKVGDQLPAADL--FE-DSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYV 342
MAP+ VGD LP L F+ + +V++ L AGKKVVLF VPGAFTP CS H+PG++
Sbjct: 1 MAPVAVGDTLPDGQLGWFDGEDKLQQVSVHGLAAGKKVVLFGVPGAFTPTCSNQHVPGFI 60
Query: 343 QNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKALDLGTNLPP 522
A++LK+ GV +I+ VSVNDP+VM AW + V+ LAD G + KAL L +L
Sbjct: 61 NQAEQLKAKGVDDILLVSVNDPFVMKAWAKSYPENKHVKFLADGLGTYTKALGLELDLSE 120
Query: 523 LG-GFRSKRFSMVIVDSKVQDLNVEPDG 603
G G RS+RF+++ + KV N+E G
Sbjct: 121 KGLGIRSRRFALLADNLKVTVANIEEGG 148
>06_03_0811 + 24830496-24831194
Length = 232
Score = 130 bits (314), Expect = 1e-30
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 7/175 (4%)
Frame = +1
Query: 136 ASARALHISQLSMAPIKVGDQLPAADL-FEDSPANK---VNICELTAGKKVVLFAVPGAF 303
A RA+ S + A I VGD+LP A L + DSP + V + +LTAGKKVVLFAVPGAF
Sbjct: 56 APRRAVSASAPAAATIAVGDKLPDATLSYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAF 115
Query: 304 TPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGN 483
TP C++ H+PG+V A +L++ GV + CVSVND +VM AW +V +L+D +G
Sbjct: 116 TPTCTQKHVPGFVAKAGELRAKGVDAVACVSVNDAFVMRAWKESLGVGDEVLLLSDGNGE 175
Query: 484 FIKALDLGTNL--PPLG-GFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKIK 639
+A+ + +L P G G RS+R++++ D V+ LN+E G + S + +K
Sbjct: 176 LARAMGVELDLSDKPAGLGVRSRRYALLAEDGVVKVLNLEEGGAFTTSSAEEMLK 230
>02_01_0691 - 5167260-5167937
Length = 225
Score = 126 bits (305), Expect = 1e-29
Identities = 75/184 (40%), Positives = 108/184 (58%), Gaps = 8/184 (4%)
Frame = +1
Query: 112 GITAFANRASARALHISQLSMAPIKVGDQLPAADLFEDSPAN----KVNICELTAGKKVV 279
G+ A RA+ R+ + +A I VGD+LP A L PA+ V + ELTAG+K V
Sbjct: 40 GVRAAGARAARRSAASASTVVATIAVGDKLPDATLSYFDPADGELKTVTVAELTAGRKAV 99
Query: 280 LFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNT-KGKV 456
LFAVPGAFTP CS+ HLPG+++ A +L + GV I CVSVND +VM AW V
Sbjct: 100 LFAVPGAFTPTCSQKHLPGFIEKAGELHAKGVDAIACVSVNDAFVMRAWKESLGLGDADV 159
Query: 457 RMLADPSGNFIKALDLGTNL--PPLG-GFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLA 627
+L+D + +AL + +L P+G G RS+R++++ D V+ LN+E G + S
Sbjct: 160 LLLSDGNLELTRALGVEMDLSDKPMGLGVRSRRYALLADDGVVKVLNLEEGGAFTTSSAE 219
Query: 628 DKIK 639
+ +K
Sbjct: 220 EMLK 223
>01_01_1148 -
9113728-9113835,9113952-9114035,9114831-9114992,
9115120-9115224,9115584-9116216,9117412-9117496,
9118426-9118520,9119083-9119241,9119968-9119997,
9120100-9120306
Length = 555
Score = 107 bits (256), Expect = 1e-23
Identities = 51/111 (45%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Frame = +1
Query: 265 GKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNT 444
GKKVV+F +PGA+T CS+ H+P Y N DKLK+ GV ++CVSVNDPY + W +
Sbjct: 70 GKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDPYALNGWAEKLQA 129
Query: 445 KGKVRMLADPSGNFIKALDLGTNL-PPLGGFRSKRFSMVIVDSKVQDLNVE 594
K + D G+F K+LDL +L L G RS R+S + D K++ NVE
Sbjct: 130 KDAIEFYGDFDGSFHKSLDLEVDLSAALLGRRSHRWSAFVDDGKIKAFNVE 180
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 45.2 bits (102), Expect = 5e-05
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 4/129 (3%)
Frame = +1
Query: 130 NRASARALHISQLSMAPIKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTP 309
+ SA+A S ++M + +GD +P +L DS K+ I + V+LF+ PG FTP
Sbjct: 23 HETSAKAAQ-SFVAMPGLTIGDTVPNLEL--DSTHGKIRIHDFVGDTYVILFSHPGDFTP 79
Query: 310 GCSK--THLPGYVQNADKLKSDGVAEIVC--VSVNDPYVMAAWGAQHNTKGKVRMLADPS 477
C+ + GY + DK + + I C V + ++ + + ++ADPS
Sbjct: 80 VCTTELAAMAGYAKEFDK-RGVKLLGISCDDVQSHKDWIKDIEAYKPGNRVTYPIMADPS 138
Query: 478 GNFIKALDL 504
IK L++
Sbjct: 139 REAIKQLNM 147
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 31.9 bits (69), Expect = 0.48
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 419 RLGELST-TPKERCVC*PIPAATSSRLWTWAPICRRSGVSAPKGSPWSSLTA 571
R G S+ P RC P P A+S L +W C RS +S+P S W TA
Sbjct: 219 RCGSASSWCPSSRC---PSPTASSESLGSWGSGC-RSHLSSPTCSSWWRTTA 266
>08_02_1402 -
26786011-26786128,26786263-26786516,26787505-26787732,
26788920-26789759
Length = 479
Score = 31.9 bits (69), Expect = 0.48
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = -1
Query: 628 RRENKTGQCHRAPHSDLEPCCQR*PWRTFWSGNPRAAADWCPGPKP 491
RRE +T H PHSDL P R P RT + + R P P P
Sbjct: 187 RREAETAHPHTQPHSDLSP---RTPRRTSAAASGRLQEKQAPPPLP 229
>06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518
Length = 524
Score = 31.5 bits (68), Expect = 0.64
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Frame = +1
Query: 220 EDSPANKVNICELTAG------KKVVLFAVP---GAFTPGCSKTHLPGYVQNADKLKSDG 372
E P + +CELT +K + F P GAF K P Y + D L G
Sbjct: 145 EGFPYARPPVCELTGDIRISPKEKTMFFVNPSSAGAFDGNGEKKIRP-YARKDDFLLP-G 202
Query: 373 VAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNF 486
V E++ SV+ P + A HN V +A + NF
Sbjct: 203 VVEVIIKSVSSPAIAPACTRTHNVPAVVFSVAGYTDNF 240
>02_05_0541 - 29866396-29866881
Length = 161
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +2
Query: 434 STTPKERCVC*PIPAATSSRLWTWAPICRRSGVSA 538
S TP RC+ PIP S+ L T A RR V+A
Sbjct: 12 SPTPSSRCLLLPIPVVVSTFLQTLAIALRRCSVTA 46
>09_06_0228 +
21706118-21706252,21706327-21706406,21706742-21706866,
21706960-21707084,21707162-21707380,21707458-21707580,
21707661-21707761,21707847-21707899,21707972-21708174
Length = 387
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -2
Query: 609 ASAIGLHIQILNLAVNDDHGEPFGAETPERRQIGAQVQSLDEVAAGIG*HTH 454
A +G + I+ AV D+ G PFG ++ R +G SL G+ TH
Sbjct: 113 AGNLGNLLLIVVPAVCDEDGNPFGKDSSRCRSLGLSYSSLSMALGGLYIWTH 164
>08_01_0627 +
5451140-5451839,5452635-5452662,5452730-5452786,
5453205-5453874
Length = 484
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -1
Query: 352 LRSVRIPASVF*SIPG*RRPAPQIIQPSFPPSTHKYSLY*RENLRINQQQAADPRP 185
LR + A++ P +P PQ+ PSFP +T S R R + DP+P
Sbjct: 13 LRDAQSAAALSNPNPPEPQPQPQLATPSFPTTTDTASRRRRRRRRRGRGNRHDPQP 68
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/79 (27%), Positives = 37/79 (46%)
Frame = +1
Query: 169 SMAPIKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQN 348
S + G P L D V++ + G+ VV++ P TPGC+K + +
Sbjct: 114 SSVQVSKGSAAPNFTL-RDQDGRAVSLSKFK-GRPVVVYFYPADETPGCTK-QACAFRDS 170
Query: 349 ADKLKSDGVAEIVCVSVND 405
+K K G AE++ +S +D
Sbjct: 171 YEKFKKAG-AEVIGISGDD 188
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 520 PLGGFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 636
PL G S F+ +I S +Q +V+ DGT SC + D I
Sbjct: 456 PLEGVGSAYFNELINRSMIQPADVQYDGTVQSCRVHDMI 494
>06_01_0861 +
6527279-6527582,6527619-6527719,6527817-6528042,
6528132-6528475,6528624-6528989,6529080-6529347,
6529479-6529696
Length = 608
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 286 AVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAW-GAQHNT 444
A+ G P C H+ + K +S V V + YV+A W G+ H++
Sbjct: 140 ALDGTHIPACVPMHMQDRFRGRKKFQSQNVLAAVDFDLRFLYVLAGWEGSAHDS 193
>03_06_0733 +
35825541-35826052,35826728-35826871,35828638-35828709,
35829232-35829739
Length = 411
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
Frame = +2
Query: 449 ERCVC*PIPAATSSR----------LWTWAPICRRSGVSAPKGSPWSSLTARFKI 583
++ VC P P ATSSR LW W R+ G KGSP+ L F I
Sbjct: 176 KKVVCIPAPPATSSRGGGGEVIPSDLWAW----RKYGQKPIKGSPYPRLCRSFNI 226
>01_06_0928 + 33085403-33089224
Length = 1273
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/54 (38%), Positives = 28/54 (51%)
Frame = -3
Query: 524 SGGRLVPRSKALMKLPLGSASIRTFPLVLC*APQAAITYGSLTDTHTISATPSD 363
SG LVP S L +L L S SI L LC ++ SLT+ T++ PS+
Sbjct: 931 SGLPLVPPS-GLCELYLSSCSITDGALALCIGGLTSLRELSLTNIMTLTTLPSE 983
>06_03_1406 -
29949367-29949556,29949753-29949837,29950625-29950791,
29951232-29952049
Length = 419
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 157 ISQLSMAPIKVGDQLPAADLFEDSPANKVN-ICELTAGKKVVLFAVPGA 300
+S +AP+++G P++ + SPA V+ + VL +PGA
Sbjct: 32 LSMADLAPVQIGPSSPSSPMSPASPATPVDAYANAPPPSEDVLLRIPGA 80
>08_02_1430 -
27048055-27048408,27049674-27049841,27049927-27050042,
27050153-27050305,27050850-27050993,27051052-27051211,
27051332-27051970
Length = 577
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -3
Query: 329 KCVLEHPGVKAPGTANNTTFFPAVNSQIFTLLAGESSNKSAAG 201
K VLEHP +K TA N + AV +++ A K A G
Sbjct: 362 KQVLEHPWLKNADTAPNVSLGDAVRARLQQFSAMNKFKKKALG 404
>06_01_0145 + 1092764-1093351
Length = 195
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +3
Query: 414 DGGLGSSAQHQRKGAYASRSQRQLHQGFGPGHQSAAARG 530
DGG G RKG R R GFG G RG
Sbjct: 131 DGGCGGVGGRGRKGGRGGRGGRGGSGGFGGGDGGRGGRG 169
>01_01_0933 -
7368672-7368785,7368860-7368895,7369581-7369715,
7369825-7369989,7370060-7370140,7370316-7370391,
7370479-7370612,7370706-7370798,7371860-7372188,
7372290-7372350,7372407-7372778
Length = 531
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -1
Query: 655 TLPTSL*SYRRENKTGQCHRAPHSDLEPCCQR*PWRTFWSGNP 527
T TS+ +YRR T R L R PWRT W G P
Sbjct: 14 TSNTSVATYRRSPCTTPAPRM--RSLSATTTRRPWRTGWRGRP 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,892,750
Number of Sequences: 37544
Number of extensions: 482603
Number of successful extensions: 1242
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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