Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16p13
(682 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 26 0.29
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 23 2.0
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 23 2.7
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 23 2.7
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 23 2.7
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 23 2.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.2
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 22 6.2
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.2
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 21 8.2
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 21 8.2
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 26.2 bits (55), Expect = 0.29
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 16 YDRYNKINNK*GNYHSKNFYLLMFL 90
Y YN NN NY+ K +Y + ++
Sbjct: 91 YSNYNNYNNNYNNYNKKLYYNINYI 115
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 23.4 bits (48), Expect = 2.0
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +1
Query: 16 YDRYNKINNK*GNYHSKNFYLLMFL 90
Y+ YN NN N + K +Y + ++
Sbjct: 334 YNNYNNYNNNYNNNYKKLYYNINYI 358
Score = 22.6 bits (46), Expect = 3.6
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +1
Query: 16 YDRYNKINNK*GNYHSKN 69
Y YN NN NY++ N
Sbjct: 324 YSNYNNYNNNYNNYNNYN 341
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 23.0 bits (47), Expect = 2.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 425 QAAITYGSLTDTHTISATPSDFSLSAF 345
Q AITY D T+ +PS SL+A+
Sbjct: 211 QTAITYVWKNDEGTLRKSPSLTSLNAY 237
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 23.0 bits (47), Expect = 2.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 425 QAAITYGSLTDTHTISATPSDFSLSAF 345
Q AITY D T+ +PS SL+A+
Sbjct: 211 QTAITYVWKNDEGTLRKSPSLTSLNAY 237
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 23.0 bits (47), Expect = 2.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 425 QAAITYGSLTDTHTISATPSDFSLSAF 345
Q AITY D T+ +PS SL+A+
Sbjct: 262 QTAITYVWKNDEGTLRKSPSLTSLNAY 288
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 23.0 bits (47), Expect = 2.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 425 QAAITYGSLTDTHTISATPSDFSLSAF 345
Q AITY D T+ +PS SL+A+
Sbjct: 211 QTAITYVWKNDEGTLRKSPSLTSLNAY 237
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.2
Identities = 9/33 (27%), Positives = 15/33 (45%)
Frame = -3
Query: 362 FSLSAFCTYPGKCVLEHPGVKAPGTANNTTFFP 264
+ S T+ G C+ PG+ + T+FP
Sbjct: 87 YQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFP 119
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 21.8 bits (44), Expect = 6.2
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1
Query: 16 YDRYNKINNK*GNYHSKNFY 75
Y+ YN NN N ++K Y
Sbjct: 327 YNNYNNYNNNNYNNYNKKLY 346
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.2
Identities = 9/33 (27%), Positives = 15/33 (45%)
Frame = -3
Query: 362 FSLSAFCTYPGKCVLEHPGVKAPGTANNTTFFP 264
+ S T+ G C+ PG+ + T+FP
Sbjct: 87 YQTSVVVTHNGSCLYVPPGIFKSTCKIDITWFP 119
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.4 bits (43), Expect = 8.2
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = +1
Query: 16 YDRYNKINNK*GNYHSKNF 72
Y YN NN N ++ N+
Sbjct: 91 YSNYNNYNNNYNNNYNNNY 109
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.4 bits (43), Expect = 8.2
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = +1
Query: 16 YDRYNKINNK*GNYHSKNF 72
Y YN NN N ++ N+
Sbjct: 91 YSNYNNYNNNYNNNYNNNY 109
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,429
Number of Sequences: 438
Number of extensions: 4331
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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