Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16p11
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   3.9  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    25   6.8  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 40  TPLVSHSHALRKVSACPSQHPRYAPSST 123
           TP  SH  A +++S  PS+HP+ + S+T
Sbjct: 254 TPFESHGPA-KQISVQPSEHPKPSISTT 280


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 331 SSWIALFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLG 465
           S+W   FT+PK  E   A + + LE    ++ +I  K  +++ +G
Sbjct: 367 SAWSTTFTIPKLTETRLAAISSILE--EFELKDIKDKPLSSISVG 409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,527,530
Number of Sequences: 5004
Number of extensions: 18072
Number of successful extensions: 48
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)