Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16o23
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...   131   1e-31
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    28   1.9  
SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p...    27   3.3  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   3.3  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    27   4.4  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score =  131 bits (317), Expect = 1e-31
 Identities = 63/152 (41%), Positives = 95/152 (62%), Gaps = 3/152 (1%)
 Frame = +2

Query: 11  MKAICIISGD--VHGKIYFQQESANRPLKISGYLL-NLPRGLHGFHVHEYGDTSNGCTSA 181
           ++A+ ++ GD  V G + F+Q   N  + +   L+ N      GFH+H++GD +NGCTSA
Sbjct: 2   VRAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSA 61

Query: 182 GEHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVV 361
           G HFNP  + HG   A +RHVGDLGN++S    ++ +    D+V+SL+G ++IIGR++V+
Sbjct: 62  GPHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNI-KTTFSDSVISLFGANSIIGRTIVI 120

Query: 362 HTDKDDLGLTEHPLSKTTGNSDGRLGCGIIAI 457
           H  +DDLG      S  TGN+  R  CG+I I
Sbjct: 121 HAGEDDLGKGTSEESLKTGNAGARNACGVIGI 152


>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = +2

Query: 5   NNMKAICIISGDVHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSA- 181
           ++   I +I  D +G+I     S    LK +G + + P   HGF +  + + S+  T A 
Sbjct: 172 SSQDTIGVICVDKNGRIAVVSSSGGLLLKPAGRIGSSPIPGHGFWIESFDNKSHSSTCAV 231

Query: 182 -----GEHFNPT 202
                GEH + T
Sbjct: 232 ATSGTGEHISNT 243


>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 85

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -3

Query: 591 QFSFEKQMTSFLKFSFEKQMTSSLDCVLHVEFYS 490
           +F+ EK + +F+K  F+K+ + +  C++   F S
Sbjct: 27  KFTIEKDIAAFIKREFDKKFSPTWHCIVGRNFGS 60


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/43 (25%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -2

Query: 496  LLVKRVKAMTSFTYGNYSASQTAV-RIAGCFAQRMLGKAQIVF 371
            L+++RV +++   YGN   +QTA+  +A   + ++L +  +++
Sbjct: 3653 LIMRRVASLSQVAYGNLPVNQTAIDYLAQASSSKVLAQMDVLW 3695


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 797 TSXIYTRKASSVLKKQMTSFFKFSFEKQRHHLLIVFYT 684
           T  I+TR  S V K++  SF+K        HL +  ++
Sbjct: 268 TKPIWTRNPSEVTKEEYASFYKSLTNDWEDHLAVKHFS 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,424,785
Number of Sequences: 5004
Number of extensions: 72587
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)