Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16o16
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    30   0.40 
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    29   0.69 
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    28   1.2  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    25   8.5  

>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
 Frame = +3

Query: 363 ILEPISEPDYNIQVQA---VKLRKRVQ-MYQWIEETTEQNNFLSEPAEEYQKTYWYHKDW 530
           I EPIS P+  ++        L  ++Q   +W      Q     E AE+ +K  +   DW
Sbjct: 200 IREPISSPEQELRENVRDPYSLLSKIQPRVRWQSHMESQKKKQKEEAEK-EKLEYAQIDW 258

Query: 531 RDYIVDSNLFYIRPGHHNPTSMP 599
            D++V   + + +   H   + P
Sbjct: 259 NDFVVVEVIQFTKSDEHAKLAKP 281


>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +3

Query: 372 PISEPDYNIQVQAVKLRKRVQMYQWIEETTEQNNFLSEPAEEYQKTYWYHKDWRDYIVDS 551
           P S  D      AV +  +V+  Q    ++ + N +S+P E +Q    + +   D +VDS
Sbjct: 9   PFSGSDNRSASSAVNVEPKVEPSQHQGSSSVKENAISQPNESFQSRNMFFQKDVDSVVDS 68

Query: 552 NL 557
            L
Sbjct: 69  AL 70


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +3

Query: 399 QVQAVKLRKRVQMYQWIEETTEQNNFLSEPAEEYQKTYWYHKDW 530
           QV+ +  +  +Q  QW+ E  ++   + +  E Y+K+    K+W
Sbjct: 145 QVETLSTQYSIQRSQWVREDEKKKKEIQDLKELYEKSEHGAKNW 188


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 129 SGERFYFHITSTT*NQHGQNNLINLTNKTRN 37
           S + ++ H T  + ++H +NNL N+TN  +N
Sbjct: 420 STQEWHSHTTPRSTSKH-ENNLNNITNSAKN 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,770
Number of Sequences: 5004
Number of extensions: 61129
Number of successful extensions: 174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)