Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16o16
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   4.0  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.9  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +3

Query: 444 WIEETTEQNNFLSEPAEEYQKTYWYHKDWRDYIVDSNLFYIRPGHHNPTSM 596
           W+E   + + F  +PAE    T  Y      ++ D  L+    G +  T+M
Sbjct: 72  WLEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTM 122


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 168 WLTTSLSLILFTGVTYFLLWAESQT 242
           W++T+ S +L      FL+  ES T
Sbjct: 349 WISTTTSFVLNNRAGRFLILTESDT 373


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 440 IHLYSFPQFDGLDLYVVVR--LRYRFQYFNWAYDMNN 336
           I ++  P++D     + +   L+Y ++  NW  D+N+
Sbjct: 516 IRIFIGPKYDSHHKLIEIPEDLKYFYEIDNWMLDLNS 552


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 440 IHLYSFPQFDGLDLYVVVR--LRYRFQYFNWAYDMNN 336
           I ++  P++D     + +   L+Y ++  NW  D+N+
Sbjct: 516 IRIFIGPKYDSHHKLIEIPEDLKYFYEIDNWMLDLNS 552


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,818
Number of Sequences: 438
Number of extensions: 4298
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)