Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16o14
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical pr...    31   0.55 
Z70034-9|CAA93849.1|  159|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U28730-5|AAA68259.1|  470|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z98853-5|CAB57903.1|  290|Caenorhabditis elegans Hypothetical pr...    28   6.8  
L19249-1|AAC37167.1|  303|Caenorhabditis elegans homeobox protei...    28   6.8  
L14429-3|AAA28218.1|  305|Caenorhabditis elegans C.elegans homeo...    28   6.8  
Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z73899-7|CAA98077.1|  492|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z48009-7|CAA88083.1|  329|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical
           protein K01B6.3 protein.
          Length = 410

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 12  MKYFLSAIFLIIVFMYAMYFCISIVVNNGRVQR-DLFYHY 128
           M +FL+A+   I + + + F ISIV  N R+ R  LF+ Y
Sbjct: 119 MVFFLTALQYAIFYSFKVIFMISIVERNARLLRLQLFFQY 158


>Z70034-9|CAA93849.1|  159|Caenorhabditis elegans Hypothetical
           protein C18E9.9 protein.
          Length = 159

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 6   LKMKYFLSAIFLIIVFMYAMYFCISIVVNNGRVQRDLFYHYNY 134
           L + +  S  F+II   Y+  FC+   +N      ++FYH+N+
Sbjct: 60  LDLTFTRSGQFVIIELAYSGAFCVCSALNTIYYFCNIFYHFNF 102


>U28730-5|AAA68259.1|  470|Caenorhabditis elegans Hypothetical
           protein K10B2.2a protein.
          Length = 470

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 329 VYVPTDDDRLYIDKKQFPKFNSVLV 403
           VY+PT   R+  DKK FP F  V +
Sbjct: 173 VYIPTLAVRILNDKKNFPNFKGVAI 197


>Z98853-5|CAB57903.1|  290|Caenorhabditis elegans Hypothetical
           protein R08A2.5 protein.
          Length = 290

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 524 VFSVLLTNNLFYCNTMIIQHENPKCPIEFTYPETDMQ 634
           +FS+  ++ +  C  M + +++   P EF+Y  TD Q
Sbjct: 133 LFSLFKSDPVMRCFQMTVLNDSTSSPFEFSYLSTDSQ 169


>L19249-1|AAC37167.1|  303|Caenorhabditis elegans homeobox protein
           protein.
          Length = 303

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 522 AFLACS*PTTCFIATL*SSSMKTPNVPLSLRIPK 623
           A  AC  PT+C  +T  S+ M +PN+P S  IP+
Sbjct: 30  ALQAC--PTSCIPST--STGMLSPNLPFSATIPR 59


>L14429-3|AAA28218.1|  305|Caenorhabditis elegans C.elegans homeobox
           protein 23 protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 522 AFLACS*PTTCFIATL*SSSMKTPNVPLSLRIPK 623
           A  AC  PT+C  +T  S+ M +PN+P S  IP+
Sbjct: 32  ALQAC--PTSCIPST--STGMLSPNLPFSATIPR 61


>Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical
           protein W02A2.3 protein.
          Length = 397

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 330 CTCPQTTIGCTLTKNNFQN 386
           C CPQ    CT + NN QN
Sbjct: 178 CPCPQNQPACTCSTNNQQN 196


>Z73899-7|CAA98077.1|  492|Caenorhabditis elegans Hypothetical
           protein ZK829.9 protein.
          Length = 492

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
 Frame = +2

Query: 404 YRHEHDVNIDSRSPKKTASATIV-------YWNPLMPITEIGAGETRVFSVLLTNNLFYC 562
           + H+ D N ++ S +K  SAT V       +    M ++   A  T  F  +L N+ F+ 
Sbjct: 248 HHHKEDANNNNNSEEKADSATSVMHILKKPHLRKAMMLSVSAAILTLPFYPILQNSTFFF 307

Query: 563 NTMIIQHENPKCPIEFTYPETDMQSACSALL 655
             M +  +  +    F      + S CS L+
Sbjct: 308 TDMGVDMKTSQLASSFMMVVLTISSICSTLI 338


>Z48009-7|CAA88083.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.10 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 3   DLKMKYFLSAIFLIIVFMYAMYFCISIVVN 92
           ++K+  F+  + +I+ F +A YF I IV+N
Sbjct: 19  NMKLSQFVDLLAIILAF-FASYFAIKIVIN 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,351,698
Number of Sequences: 27780
Number of extensions: 328162
Number of successful extensions: 962
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)