Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16o11
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    28   0.98 
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce...    27   1.7  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    27   3.0  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    25   6.9  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    25   6.9  
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar...    25   9.1  

>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
 Frame = -1

Query: 189 HFSRWVAARC*CLQAPLTTKL-----GGACDRTRIPCALLYGFW 73
           H+S   AARC     P+  +       G      +PC ++Y FW
Sbjct: 231 HYSTLFAARCCGCDGPILRQFVEVYRNGVSQNWHVPCHMIYKFW 274


>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 388

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 86  YTGSGYSLFKKKTFKPTNVLSRRRSK 9
           Y+G GY   KK TFK T V ++ +S+
Sbjct: 232 YSGKGYFTGKKNTFKATIVNAKTKSE 257


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
 Frame = +1

Query: 133 SGKWSLETSTTCRHP--PREMSSRSQNNWLQFPGRNGRSDFTYPDEVTRR 276
           +GK        CR    P    S S+  WL +P   G  D + P+  TR+
Sbjct: 119 TGKLDFCAHCNCRFTITPYSKYSNSEKGWLCYPCSRGAEDRSVPELRTRK 168


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -3

Query: 220 IVTSCFEILNSFLEVGGGTLLMSPSSTYH 134
           +V+S  +I +    V GG+++++PSS Y+
Sbjct: 421 VVSSLTKIFSGDSNVMGGSMVLNPSSRYY 449


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +2

Query: 209 TGYNFPAEMDGVILPTRTRSQDAVPPVNTSRYNNPEAKSKAQ 334
           +GY FP +  G  +P +   +   PP ++S+       SK +
Sbjct: 217 SGYIFPFQRVGATVPKKRLVETETPPPSSSKLKEDYKDSKRE 258


>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 98  HAHCYTGSGYSLFKKKTFKPTNVL 27
           H+HC   S Y+   +K+FK  N L
Sbjct: 61  HSHCQLSSSYTNSGQKSFKSFNSL 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,107
Number of Sequences: 5004
Number of extensions: 56311
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)