Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16o11
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0267 - 2153421-2153759,2153895-2154098,2154358-2154429,215...    31   0.58 
04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600           29   3.1  
03_06_0365 - 33399422-33399925,33400470-33400583,33400762-334009...    29   3.1  
09_06_0032 + 20353789-20353963,20354240-20354340,20354426-203545...    28   5.4  
01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,380...    28   7.1  

>08_01_0267 -
           2153421-2153759,2153895-2154098,2154358-2154429,
           2154514-2154599,2154704-2154830,2154899-2155052,
           2156129-2156451
          Length = 434

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 148 LETSTTCRHPPREMSSRSQNNWLQFPGR 231
           L  STT +  PRE+  R  + WL+ PGR
Sbjct: 66  LSNSTTGQESPREVEDRGASMWLEGPGR 93


>04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600
          Length = 585

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 215 NQLF*DLELISRGGWRHVVDVSKLHLPLN*VGRVIV 108
           N++  +LE +  GGWR +V+  K+H  +     VIV
Sbjct: 359 NEVIAELERLIPGGWRRMVEWGKVHTKVGEAEMVIV 394


>03_06_0365 -
           33399422-33399925,33400470-33400583,33400762-33400929,
           33401305-33401547,33402148-33402231,33402323-33403098,
           33404423-33404636
          Length = 700

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +2

Query: 197 DLKTTGYNFPAEMDGVILPTRTRSQDAVPPVNT 295
           D   TG NF A  D   +P  T   D  PPVNT
Sbjct: 209 DTANTGINFDAYED---IPVETSGHDVPPPVNT 238


>09_06_0032 +
           20353789-20353963,20354240-20354340,20354426-20354560,
           20354633-20354714,20354829-20354896,20354984-20355073,
           20355133-20355257,20355384-20355717,20355841-20355957,
           20356058-20356485,20356564-20356813,20356944-20357194,
           20357278-20357587
          Length = 821

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = +3

Query: 153 DINNVPPPTSRNEFKISKQLVTISRQKW 236
           ++N+ P  + +++ KI+K++ T+S  KW
Sbjct: 623 EMNHAPQSSEQHQPKIAKEVATVSLSKW 650


>01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,
            3807118-3807282,3807363-3807657,3807739-3807953,
            3808125-3808430,3808539-3808602,3808735-3808974,
            3809150-3809253
          Length = 1493

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 344  IGVIELCFWLQGYYIET 294
            I V+  CFW Q YYI+T
Sbjct: 1076 IPVLAACFWYQRYYIDT 1092


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,799,516
Number of Sequences: 37544
Number of extensions: 361294
Number of successful extensions: 746
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)