Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16o01
         (259 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    24   2.9  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    23   6.7  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    23   8.9  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    23   8.9  
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    23   8.9  

>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +1

Query: 4   SCTIFRPERSSXLQXLDLNGXVFSYPPKSVR 96
           +C  +RP+        D+NG ++ + PK+++
Sbjct: 345 NCAAYRPDFEQCFTG-DMNGNIYMWSPKALK 374


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 218 FXLIGVQHSTIQSC 259
           F  +G QHSTIQ C
Sbjct: 387 FRDLGYQHSTIQHC 400


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 67  VFSYPPKSVRVT 102
           +F+YPPKSV+ T
Sbjct: 793 LFAYPPKSVQPT 804


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 192  LPIIKRRVNSNSSASNTRQFKV 257
            +P++ +R  + SSA NT  F +
Sbjct: 967  MPVLFKRFKNLSSAENTTSFSI 988


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 159 RYXRTKKSXLYLPIIKRRVNS 221
           +Y  T    LYLP +KR V +
Sbjct: 313 KYINTNNVWLYLPAVKRVVEN 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 729,973
Number of Sequences: 5004
Number of extensions: 8918
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)