Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16n09
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    28   1.3  
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...    27   1.8  
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...    27   1.8  
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...    27   1.8  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    26   4.1  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   5.4  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    26   5.4  
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom...    25   7.1  
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    25   9.4  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    25   9.4  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   9.4  

>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -1

Query: 324 SGLSRSPLLMIPNRKQPSLMIS 259
           SG+SR P+LM P+  +PSL ++
Sbjct: 369 SGMSRHPMLMNPSTPEPSLGVN 390


>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = -2

Query: 518 GESVR--DPAERIDHVSRVSAVTNASNGFTDQVISRNEYATK-KQYGRCDPIVHTEHHV 351
           G ++R  DP  +++   +++  TN    F     S     T  +  GR   IVH EHH+
Sbjct: 144 GRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHL 202


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = -2

Query: 518 GESVR--DPAERIDHVSRVSAVTNASNGFTDQVISRNEYATK-KQYGRCDPIVHTEHHV 351
           G ++R  DP  +++   +++  TN    F     S     T  +  GR   IVH EHH+
Sbjct: 144 GRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHL 202


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = -2

Query: 518 GESVR--DPAERIDHVSRVSAVTNASNGFTDQVISRNEYATK-KQYGRCDPIVHTEHHV 351
           G ++R  DP  +++   +++  TN    F     S     T  +  GR   IVH EHH+
Sbjct: 144 GRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHL 202


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 60  LLVTTNRFTIMTHFE*CDEVIHYRSEIIN*REIVSLVLWTLPTCV 194
           L   T+RF+   H E   E++H R + +N +  V  V+  L  C+
Sbjct: 827 LATDTSRFSSAFHTEEVYEILHSRIDWLNIKYEVDKVIHGLACCI 871


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 152 TLVYNFAPIVYYFIALFKMCHYSEAI 75
           TL+ N AP+V+ F +  K  HY+  +
Sbjct: 423 TLLLNIAPVVFIFASSTKEQHYASRL 448


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 157 SFRWCCGHCPLVFVKFQVNGE 219
           S RWC G C L  ++F  N +
Sbjct: 171 SIRWCVGVCSLSLIEFLQNSK 191


>SPCC1183.06 |ung1||uracil DNA N-glycosylase
           Ung1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 204 KLNKHKWAVSTAPAKRSHVSL 142
           K NK KWA +  PA+R  + L
Sbjct: 57  KFNKEKWAENLTPAQRKLLQL 77


>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 23/73 (31%), Positives = 31/73 (42%)
 Frame = +3

Query: 270 GMAVFGLVSSVAGFVKVRYLIDKAVIDNMVFRMHYRITSAILFLCCILVTANNLIGEPIA 449
           G+  F L S+ AG +    LI  A I    F   Y    A+L    +LVT    +  P+A
Sbjct: 250 GVERFSLPSTTAGLI---VLIINASI---TFVSDYLWVIAMLMTSPLLVTVGMSLSIPLA 303

Query: 450 CISDGANPGHVIN 488
              D    GH +N
Sbjct: 304 LFFDILLKGHYLN 316


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +1

Query: 31  ACREL--PVHIRYSLPQIASL 87
           ACR L  P HI+++LP++  L
Sbjct: 315 ACRRLYKPAHIQFALPKVVDL 335


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 530 SIRHGESVRDPAERIDHVSRVSAVTNASNGFTDQVISRNEYATK 399
           SI    S+R P+      +   A TNA+N  T    +++E ATK
Sbjct: 340 SIPSSGSIRSPSLT---TTSAQATTNATNNITTTTAAQDENATK 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,763
Number of Sequences: 5004
Number of extensions: 55466
Number of successful extensions: 148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)