Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16n09
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645     29   4.2  
05_04_0318 - 20164582-20165031,20165346-20165659,20165767-20165935     28   7.4  
06_01_0877 + 6728883-6729651,6729989-6730224,6730423-6730704,673...    27   9.7  

>09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645
          Length = 375

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/70 (24%), Positives = 30/70 (42%)
 Frame = -2

Query: 560 ETRMGCGFRCSIRHGESVRDPAERIDHVSRVSAVTNASNGFTDQVISRNEYATKKQYGRC 381
           +T   CG+   + H +S R      D + ++ A TN   GF  Q+  + +   K+++   
Sbjct: 260 QTLAMCGYLPLMMHNDSFRKCVPCFDSMGKMPANTNIGGGFL-QLFDKEKAKVKEKFSAL 318

Query: 380 DPIVHTEHHV 351
              V    HV
Sbjct: 319 SSRVCLSAHV 328


>05_04_0318 - 20164582-20165031,20165346-20165659,20165767-20165935
          Length = 310

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +3

Query: 498 WITYTFTMPNTTSKTAAHPGLGDDNDEKRIHSYYQWVPFMLF 623
           WI + + + NT   TA+HP L        +    +WV   +F
Sbjct: 131 WIMHEYRLTNTGGSTASHPSLSSSTAHPSV-KLDEWVLCKIF 171


>06_01_0877 +
           6728883-6729651,6729989-6730224,6730423-6730704,
           6731297-6731335,6731719-6731826,6731873-6732220
          Length = 593

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 294 IPNRKQPSLMISLTILFSNLTVIRNFPVHLKLNKHKW 184
           + N +  S +IS  +L SNL++ RNF      + H W
Sbjct: 56  VQNPQNISQVISTELLASNLSITRNFSDRELQSLHSW 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,702,628
Number of Sequences: 37544
Number of extensions: 357861
Number of successful extensions: 857
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)