Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16n09
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    26   0.27 
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               25   0.83 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   2.5  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   5.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.9  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   7.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.8  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 478 CPGLAPSLMQAMGSPIRLLAVTSMQQRNSMADV 380
           CPG+A S    MGSP R L     +   S+  V
Sbjct: 204 CPGMALSQFDLMGSPYRNLTFVRREGEFSVLQV 236


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 124 CITSSHYSKCVIIVKRFVVTSSECVPAAHDTPAACES 14
           C+T+  +S+CVI   +F +T      A  +T +  ES
Sbjct: 111 CLTAQKFSRCVIDYVKFHITQYMISNANSNTTSEEES 147


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +3

Query: 444 IACISDGANPGHVINTFCWITYTFTMPNTTSKTAA 548
           +  ISD      + N + W    F  PN  +K AA
Sbjct: 12  LLAISDSQAQEKLKNIYSWKALEFAFPNGYAKLAA 46


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 91  IIVKRFVVTSSECVPAAHDTPAA 23
           II KR+V+T++ C+   + T  A
Sbjct: 192 IISKRYVLTAAHCIIDENTTKLA 214


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
 Frame = +1

Query: 514 SPCRILHLKPQPILVSATTT----MRNAYTLTINGYRSCCS 624
           S C +L    +P+L S+TTT         T+  N   S CS
Sbjct: 310 SQCPMLQKLEKPVLSSSTTTTSPMTSTKSTIVRNHLNSTCS 350


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 480 VINTFCWITYTFTMPNTTSKTAA 548
           ++  F W T  +  P+  SKT A
Sbjct: 34  LLERFFWRTLDYAYPDEASKTMA 56


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/41 (26%), Positives = 15/41 (36%)
 Frame = +3

Query: 420 ANNLIGEPIACISDGANPGHVINTFCWITYTFTMPNTTSKT 542
           + + + E I C       G    TFC   Y   +    SKT
Sbjct: 433 SESCLPEEILCPHFNVTDGETTKTFCCKGYCMDLLKELSKT 473


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,111
Number of Sequences: 438
Number of extensions: 3524
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)