Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16n08
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    27   2.4  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    26   4.2  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    26   4.2  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    26   4.2  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    25   9.7  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    25   9.7  
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    25   9.7  

>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -2

Query: 85  KNENLFF--WVFFCKLHKLSLWSFFMTW 8
           K+E ++F  W   C +  +SLW F+ TW
Sbjct: 134 KDEWVYFGVWCAICLMIFISLWYFYETW 161


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -2

Query: 85  KNENLFF--WVFFCKLHKLSLWSFFMTW 8
           K+E ++F  W   C +  +SLW F+ TW
Sbjct: 134 KDEWVYFAVWCASCLMIFISLWYFYETW 161


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 157 ISVYFMTLNSITNTILFTEFTFTLKNENLFFWVFFCKLHK 38
           ++VYF  L++I ++  F  FT      +LFF V   K+H+
Sbjct: 361 MNVYFKGLSNIISSFAFIGFTLFATLSSLFFKVL--KIHR 398


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 589 FSTEAFVLCTTFGLNFLPRLCCCF 660
           F  E+  L     L FLP+  CCF
Sbjct: 117 FDVESIDLVNIIDLEFLPKAICCF 140


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 489 SGNHPKSKKRRALLDVTPRLTRQLFDFKGSQLTMALWAI 373
           SGN       RA+ DV+ +  +Q    K  QL M +W++
Sbjct: 183 SGNVTHVATVRAIQDVSVKYAKQDVITKARQLNMKIWSM 221


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
 Frame = -1

Query: 335 PFRIVSTRSF--LSRSVVRTSVIFAKIKVQFLFYMIM----FLIADFLNSELNCVYF 183
           P ++ ++ SF  L + V +TS      K+  L +++     FLI+D + SE+  VYF
Sbjct: 277 PNKLDNSASFSDLLKFVYKTSKPSPYAKISLLHFLLTESKHFLISDHIFSEIQKVYF 333


>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 67  FWVFFCKLHKLSLWSFFMTW 8
           FW F C L  + L  F+ TW
Sbjct: 115 FWCFVCTLALIFLTYFYETW 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,917
Number of Sequences: 5004
Number of extensions: 55789
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)