Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16n01
(759 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 31 0.18
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 29 0.54
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met... 29 0.95
SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc... 28 1.3
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 28 1.7
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c... 27 2.9
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 27 2.9
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 27 3.8
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 26 5.1
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 26 5.1
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 26 5.1
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 8.9
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 31.1 bits (67), Expect = 0.18
Identities = 11/37 (29%), Positives = 25/37 (67%)
Frame = +1
Query: 253 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELD 363
++ +L+C C ++ EI N M+P+++L ++ +L L+
Sbjct: 240 LQIEELRCAACETMTEIVNKKMKPLEKLNLLNILNLN 276
>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
ligase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 788
Score = 29.5 bits (63), Expect = 0.54
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 445 ESLHFNVYSINRNVVDVIKCSVTSVAQWNKINDNFDAASLASVLFEKSLL 594
+ +H N YS+ R +V+ TSV W+K D+ + + ++ K LL
Sbjct: 619 DGVHSNGYSLVRKIVEYSDLEYTSVCPWDKNVRLGDSLLIPTRIYVKPLL 668
>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
Met11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 28.7 bits (61), Expect = 0.95
Identities = 13/60 (21%), Positives = 27/60 (45%)
Frame = +1
Query: 439 RVESLHFNVYSINRNVVDVIKCSVTSVAQWNKINDNFDAASLASVLFEKSLLDDAEDSNN 618
RV HF ++ R+V ++K S +W ++ + L ++ LD+ + +N
Sbjct: 282 RVHGFHFCTLNLERSVALILKNSGLLTKRWKQVESEMEDEKLLRTTRKRLSLDEPAELHN 341
>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 290
Score = 28.3 bits (60), Expect = 1.3
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +1
Query: 559 SLASVLFEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNK 735
SL S +S D E++ A+ S D L Q +KL +D +++ +KRQ+DL K
Sbjct: 2 SLVSYPRSESESDIEEETPLASKSFDPTLF--QHARRKLSVDSTKKSPKRLKRQVDLQK 58
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 27.9 bits (59), Expect = 1.7
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +1
Query: 541 DNFDAASL----ASVLFEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLN 708
D F+ AS ASV E+S ++ A NNAA S + + S +++ + + ++AE Q
Sbjct: 833 DEFNGASETVDGASVEAERSAMEAAA-LNNAAESTEVVGSSPESVASEQEENVAESAQAR 891
Query: 709 IK 714
++
Sbjct: 892 VE 893
>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
3|||Manual
Length = 197
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 445 ESLHFNVYSINRNVVDVIKCSVTSVAQWNKIN 540
+ LH N+YS+ R ++ V+ SV W +N
Sbjct: 78 KDLHPNIYSLLRLLIAVLAVSVVFFTAWGCVN 109
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 613 NNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQXTSVFM 759
NN + D+T+ +E+ KK + A L ++L LN TS+F+
Sbjct: 524 NNVPSGDNTLSTEALQDKKKSEELTAHSKILQAAKKLRLNSTLRTSIFV 572
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.6 bits (56), Expect = 3.8
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Frame = -2
Query: 572 TLAKEAASKLSFILF--HCATLVTL-HLITSTTFRFML*TLKC-KLSTLHRGHGIFFRFL 405
+++++ AS+L + LF H A L++L +L T ML + + LHRGH + F
Sbjct: 281 SISQQKASELMYKLFSEHIAFLLSLKNLPEEATLDCMLSICQVFENDNLHRGHSDEYTFA 340
Query: 404 ILRMHIE 384
+L +E
Sbjct: 341 MLEQLLE 347
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +1
Query: 256 EFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELD 363
E +KL+ ++ +SV +YF++P R ++P++ D
Sbjct: 613 ELLKLKQDVDYSVTPNGDYFVKPHVRKGLLPIILAD 648
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +1
Query: 253 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSM 390
+E++K + + +AE F+Q + +T I L C +L S+
Sbjct: 336 VEYLKTRMKVLHVIAETPTSFLQHVKDITFIDKKPLRFCAERLTSL 381
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 26.2 bits (55), Expect = 5.1
Identities = 20/78 (25%), Positives = 33/78 (42%)
Frame = +1
Query: 484 VVDVIKCSVTSVAQWNKINDNFDAASLASVLFEKSLLDDAEDSNNAANSDDTMLSESQAI 663
VVDV+K S A + D FE D + S + N D +++
Sbjct: 43 VVDVLKVKSESSADELEERDAHLDRFRRDSTFESETSDHEDFSGGSENELDEETTKNANS 102
Query: 664 LKKLQIDIAEQTQLNIKR 717
+KK+ ++ E+ + IKR
Sbjct: 103 IKKISLEEVEKQRKAIKR 120
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/33 (30%), Positives = 12/33 (36%)
Frame = +1
Query: 355 ELDTCKHQLCSMCXXXXXXXXXXPCPLCRVESL 453
+L CKH C CPLCR +
Sbjct: 781 KLQACKHFFHQACIDQWLTTGNNSCPLCRAHGV 813
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,634,283
Number of Sequences: 5004
Number of extensions: 46890
Number of successful extensions: 155
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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