Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16m21
(581 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1312 + 32565447-32565585,32566008-32566060,32566139-325667... 33 0.17
04_04_1311 - 32559549-32559674,32559761-32560078,32560158-325602... 33 0.22
01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755 29 2.7
02_05_1059 + 33815979-33816235,33816467-33816732,33817149-338171... 28 4.7
11_06_0222 - 21413676-21413696,21413813-21413896,21414042-214143... 27 8.2
09_04_0037 + 13992103-13992624,13993001-13993180,13993423-139936... 27 8.2
07_03_0971 + 23038409-23039134,23040321-23040611 27 8.2
>04_04_1312 +
32565447-32565585,32566008-32566060,32566139-32566771,
32566844-32566972,32567052-32567144,32567220-32567336,
32567412-32567512,32567603-32567870,32568236-32568265,
32568361-32568572,32568650-32568731,32568804-32569555,
32569640-32569811,32570412-32570498,32570578-32570895,
32570982-32571107
Length = 1103
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 234 RIVLFCKLLNIINVSVLRESISSTTLEKCFSIDSYMTTSIDFISCS 97
R + +L I +++L +S +CF YM TSI FI C+
Sbjct: 422 RSMFSTELKTKIKINILDHEVSERNYVECFKQQGYMNTSIMFIQCA 467
>04_04_1311 -
32559549-32559674,32559761-32560078,32560158-32560244,
32560845-32561016,32561101-32561852,32561925-32562006,
32562084-32562295,32562391-32562420,32562786-32563074,
32563143-32563243,32563319-32563435,32563511-32563603,
32563683-32563811,32563884-32564516,32564765-32564844,
32565152-32565164
Length = 1077
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 201 INVSVLRESISSTTLEKCFSIDSYMTTSIDFISCS 97
I +++L +S +CF YM TSI FI C+
Sbjct: 407 IKINILDHEVSERNYVECFKQQGYMNTSIMFIQCA 441
>01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755
Length = 482
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +2
Query: 167 DEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKISNLDEKI 292
+EI+ LK+D + S LQNNT++ + K++ L+EK+
Sbjct: 170 EEIERLKSDNAALSSELQNNTLKK----LNMEKRMQALEEKL 207
>02_05_1059 + 33815979-33816235,33816467-33816732,33817149-33817192,
33817363-33817539,33817638-33817964,33818067-33818192,
33818518-33818622,33818815-33820125,33820221-33820382,
33820416-33820517,33820549-33821272,33821358-33821451,
33821824-33821986
Length = 1285
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +2
Query: 158 NVVDEIDSLKTDTFMML--SNLQNNTIRTWDAVVKNGKKISNLDEKI 292
+V + +KTD +L +++QNNT+ V K+ ++N +E++
Sbjct: 941 HVFSAVLCMKTDLLFVLVHTSMQNNTLEVGKDVAKDTDNVANAEEQV 987
>11_06_0222 -
21413676-21413696,21413813-21413896,21414042-21414305,
21414495-21414592,21414691-21414796,21414872-21414960,
21415048-21415170,21415379-21415566,21416069-21416172,
21416743-21416838,21417061-21417159
Length = 423
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +2
Query: 62 GYLVYAGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTW 241
G ++ A + + + IK LV++ + ++H + +D L+TD M+ + N + W
Sbjct: 130 GKIITAPIITEDGKPIKDPLVLLEATSDQH---TMQGLDVLRTDRSMVFYENKENLSKLW 186
Query: 242 D 244
D
Sbjct: 187 D 187
>09_04_0037 +
13992103-13992624,13993001-13993180,13993423-13993691,
13994120-13995773
Length = 874
Score = 27.5 bits (58), Expect = 8.2
Identities = 22/94 (23%), Positives = 41/94 (43%)
Frame = -3
Query: 366 NLVISSVY*TLSRLLTTPFFVNSTLIFSSRLDIFLPFFTTASHVRIVLFCKLLNIINVSV 187
N +S Y S ++ PFF L F+ + L ++ H ++LF L+ N V
Sbjct: 668 NAYRASSYVVASLVVYLPFFAVQGLTFAVITKLMLRMESSLLHFWVILFASLIT-TNAYV 726
Query: 186 LRESISSTTLEKCFSIDSYMTTSIDFISCSSLFK 85
+ S + +++ TT++ F++C K
Sbjct: 727 MLVSALVPSYITGYAV-VIATTALFFLTCGFFLK 759
>07_03_0971 + 23038409-23039134,23040321-23040611
Length = 338
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = +2
Query: 41 RFSICLVGYLVYAGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQ 220
RFS C G L+ L+ + + + ++ H V D S TD+F + S
Sbjct: 32 RFSPC--GRLLATASLDGTVALLSPSSLAAIATLRGHADGVSDI--SWSTDSFYLCSASD 87
Query: 221 NNTIRTWD 244
+ T+R WD
Sbjct: 88 DRTLRIWD 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,236,619
Number of Sequences: 37544
Number of extensions: 249172
Number of successful extensions: 574
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -