Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16m18
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    29   0.43 
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.00 
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    27   3.0  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    27   3.0  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    26   4.0  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    25   7.0  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    25   9.3  
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    25   9.3  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   9.3  

>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 222 SAGSLRRLRNFLPTATKTALAQSLLLPILDYADSSYPD 109
           S G   +  NFL   + ++ AQSL +   DY+D ++PD
Sbjct: 556 STGRNCQATNFLRAFSNSSFAQSLGIVFDDYSDGTFPD 593


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = -2

Query: 581 DVANQPVVPFAKCGFFTGRRIRVGHGQSVVLSWLRVPFH*RLVFH-----LSWSQLITFF 417
           D  +  +   A+C F   + + +   +S++ S +R+ ++  + ++     L W Q I  +
Sbjct: 438 DYLDNDIYVHARCLFLLTKTLNLDSLKSILCSRVRLYYNIEIAYYFTDVLLKWFQPIIRY 497

Query: 416 NFDSAWVFH 390
            FD+A +F+
Sbjct: 498 EFDNALIFY 506


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 20/46 (43%), Positives = 26/46 (56%)
 Frame = -2

Query: 626 HVLGQSFAGVYLVALDVANQPVVPFAKCGFFTGRRIRVGHGQSVVL 489
           H +G  +AG  L  + VA  P+ PFA   FF GR+IR     +VVL
Sbjct: 534 HNMGVGWAGSLLGFIAVALIPM-PFAF--FFFGRKIREKSKMAVVL 576


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 22/86 (25%), Positives = 36/86 (41%)
 Frame = +3

Query: 354  DVIPKAPAALLQVKYPSGVEVKEGNELTPTQVKDEPSVKWDAEPGQYYTLAMTDPDAPSR 533
            D+I K     L++ +P G  +     LTP  VK E  V+     G+     +   D P+ 
Sbjct: 994  DLISKGATKPLEIAFPDGASILVAFRLTPVPVKLE-EVEMYENMGEMTVDVIKATDLPAA 1052

Query: 534  KEPTFREWHHWLVGNIQGNEVNSGET 611
                  +   ++V  +QG EV   +T
Sbjct: 1053 DSNGKSD--PFVVFELQGEEVYRTKT 1076


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +3

Query: 258 RSMKVATMVNFRVLTRAMSTVAKSFEASQVVPDVIPKAPAALLQVKYPSGVEVKEGNELT 437
           +S  + T+ NF   +   ST++   + +++ PD +    A LL  K    V+ K  NELT
Sbjct: 98  KSASLDTVANFLDFSTDFSTLSTKKDETEIAPDCLHYI-AELLFQKKEREVKEKWKNELT 156


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 540 PTFREWHHWLVGNIQGNE--VNSGETLSQ 620
           P+F+E  HW+V ++   E  + SG  LSQ
Sbjct: 139 PSFKETPHWIVKDLSPAESLIPSGPILSQ 167


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 622 YWDKVSPEFTSLPWMLPTSQWCHSRN 545
           YW  V+P  T L   L  + WC + N
Sbjct: 23  YWPSVAPAATELISKLINAFWCQTLN 48


>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 142 NS*LRRFQLSGSNILKKLFLKQMNNCVQVFVKVK 41
           NS L     SG+ IL + +++++NNC++     K
Sbjct: 126 NSSLYTENYSGTKILIEEYVREVNNCLEFLYHTK 159


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 396 YPSGVEVKEGNELTPTQVKDEPSVKWDAEPGQY 494
           YP+GV    G+E TP         ++  E G++
Sbjct: 67  YPTGVTESYGDEYTPVDTASSGINQYSTEKGKF 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,019
Number of Sequences: 5004
Number of extensions: 60353
Number of successful extensions: 143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)