Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16m18
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016423-3|AAB65322.1|  221|Caenorhabditis elegans Hypothetical ...   159   2e-39
AF016423-4|AAX88829.1|  185|Caenorhabditis elegans Hypothetical ...   157   5e-39
AL034365-5|CAA22258.1|  172|Caenorhabditis elegans Hypothetical ...    68   7e-12
AC024756-2|AAK29884.1|  413|Caenorhabditis elegans Hypothetical ...    32   0.40 
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF038618-9|AAB92066.1|  304|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AF016423-3|AAB65322.1|  221|Caenorhabditis elegans Hypothetical
           protein F40A3.3a protein.
          Length = 221

 Score =  159 bits (386), Expect = 2e-39
 Identities = 73/134 (54%), Positives = 92/134 (68%), Gaps = 2/134 (1%)
 Frame = +3

Query: 246 LLFVRSMKVATMVNFRVLTRAMSTVA-KSFEASQVVPDVIPK-APAALLQVKYPSGVEVK 419
           L F      A         R ++T+A ++F   +V+PDV+    P+ ++ VK+ SGVE  
Sbjct: 13  LFFASRAPFAAATTSARFQRGLATMAAEAFTKHEVIPDVLASNPPSKVVSVKFNSGVEAN 72

Query: 420 EGNELTPTQVKDEPSVKWDAEPGQYYTLAMTDPDAPSRKEPTFREWHHWLVGNIQGNEVN 599
            GN LTPTQVKD P VKWDAEPG  YTL  TDPDAPSRKEPT+REWHHWLV NI GN++ 
Sbjct: 73  LGNVLTPTQVKDTPEVKWDAEPGALYTLIKTDPDAPSRKEPTYREWHHWLVVNIPGNDIA 132

Query: 600 SGETLSQYVGSGPP 641
            G+TLS+Y+G+GPP
Sbjct: 133 KGDTLSEYIGAGPP 146


>AF016423-4|AAX88829.1|  185|Caenorhabditis elegans Hypothetical
           protein F40A3.3b protein.
          Length = 185

 Score =  157 bits (382), Expect = 5e-39
 Identities = 68/108 (62%), Positives = 84/108 (77%), Gaps = 1/108 (0%)
 Frame = +3

Query: 321 AKSFEASQVVPDVIPK-APAALLQVKYPSGVEVKEGNELTPTQVKDEPSVKWDAEPGQYY 497
           A++F   +V+PDV+    P+ ++ VK+ SGVE   GN LTPTQVKD P VKWDAEPG  Y
Sbjct: 3   AEAFTKHEVIPDVLASNPPSKVVSVKFNSGVEANLGNVLTPTQVKDTPEVKWDAEPGALY 62

Query: 498 TLAMTDPDAPSRKEPTFREWHHWLVGNIQGNEVNSGETLSQYVGSGPP 641
           TL  TDPDAPSRKEPT+REWHHWLV NI GN++  G+TLS+Y+G+GPP
Sbjct: 63  TLIKTDPDAPSRKEPTYREWHHWLVVNIPGNDIAKGDTLSEYIGAGPP 110


>AL034365-5|CAA22258.1|  172|Caenorhabditis elegans Hypothetical
           protein Y69E1A.5 protein.
          Length = 172

 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
 Frame = +3

Query: 309 MSTVAKSFEASQVVPDVIPKAPAALLQVKYPSGVEVKEGNELTPTQVKDEPSVKW---DA 479
           MS ++ +F   ++ P +I  AP   L + +  G++V+ G  +    +K+ P  +W    A
Sbjct: 1   MSDISAAFAQHEITPKIIENAPKQKLHLCW-DGIQVEPGMTMQVRNLKNAP--RWALPGA 57

Query: 480 EPGQYYTLAMTDPDAPSRKEPTFREWHHWLVGNIQGNEVNSG 605
           +P   YT+ M DPD  SRK P+  EW HWLV NI  + +  G
Sbjct: 58  DPESIYTVLMIDPDNLSRKNPSVAEWLHWLVCNIPASNIIDG 99


>AC024756-2|AAK29884.1|  413|Caenorhabditis elegans Hypothetical
           protein Y34D9A.1 protein.
          Length = 413

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
 Frame = +3

Query: 384 LQVKYPSGVEVKEGNELTPTQVKDEPSVKWDA--EPGQYYTLAMTDPDAPSRKEPTFREW 557
           LQV + + + V  GN +T       P +  ++    G + TL M + D  +       E 
Sbjct: 157 LQVNFENDIVVHSGNVITANSTLKRPEITIESVGNGGGFNTLLMINLDGNALDLGKNGEI 216

Query: 558 HHWLVGNI-QGNEVNSGETLSQYV 626
             W++ NI  G  +++G  +  Y+
Sbjct: 217 VQWMISNIPDGEAISAGSEIIDYL 240


>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
            T28C6.9 protein.
          Length = 1861

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 84   KNSFFSILDPDSWNRRSQELEEVK 155
            +NS     D D+WN+   E+EEVK
Sbjct: 1598 ENSASGWNDDDAWNKNENEIEEVK 1621


>AF038618-9|AAB92066.1|  304|Caenorhabditis elegans Hypothetical
           protein F42G8.5 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
 Frame = +3

Query: 306 AMSTVAKSFEASQVVPDVIPKAPAALLQVKYPSGVEVKEG-NELTPTQVKDEPSVKWDAE 482
           AMS V K  +  ++ P VIP      L  + P+ + V    N L  T V    S   D  
Sbjct: 188 AMSNVVKPHDEKKLYPPVIPGCSTLSLHRRSPNNIFVASPYNTLRATSVGRYQSGFLDTN 247

Query: 483 PGQYYTLAMTDPDAPSRKE 539
                 L    P   SR++
Sbjct: 248 SIMENRLGSRQPSVASRRQ 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,683,397
Number of Sequences: 27780
Number of extensions: 345319
Number of successful extensions: 773
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)