Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16m16
         (402 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1385 - 33157557-33157655,33157752-33158201,33158864-331590...    31   0.34 
02_03_0246 - 16807619-16808145,16808208-16808868                       29   1.8  
05_03_0653 + 16617121-16617359,16618892-16618955,16619455-166194...    28   2.4  
10_08_0854 + 21086253-21086258,21086320-21086480,21087065-210871...    27   5.6  
03_02_0085 - 5539188-5539388,5539576-5539714,5540108-5540279,554...    27   5.6  
06_03_1294 - 29080347-29081447                                         27   7.3  

>04_04_1385 -
           33157557-33157655,33157752-33158201,33158864-33159004,
           33159058-33159329,33160371-33160821
          Length = 470

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
 Frame = +3

Query: 189 CYCWNPCAKPA--CCGNEYWCYTRHRPTSTLQETTTLRRRD 305
           CY W  C      CC + Y C     P   +Q+ T L  +D
Sbjct: 401 CYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKD 441


>02_03_0246 - 16807619-16808145,16808208-16808868
          Length = 395

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +3

Query: 159 LSRSFRT-HCCCYCWNPCAKPACCG 230
           LSRS R+      CW PC  P CCG
Sbjct: 98  LSRSCRSSRMAARCW-PCRPPCCCG 121


>05_03_0653 +
           16617121-16617359,16618892-16618955,16619455-16619485,
           16619577-16619848,16620528-16620633,16620715-16620872,
           16621527-16621714,16621786-16621855,16622814-16622984,
           16624363-16624838,16625625-16625871,16626158-16626490,
           16627329-16627412,16627751-16627843,16627966-16628025,
           16628582-16628680,16628830-16628970,16629207-16629287,
           16629895-16629966,16631160-16631231,16632083-16632176,
           16632257-16632339,16632455-16632532,16632914-16632970,
           16633055-16633132,16633236-16633357,16633463-16633623,
           16634419-16634495,16634570-16634683,16634857-16634958,
           16635368-16635436,16635437-16635577,16635936-16636109,
           16636934-16637063,16637137-16637276,16637369-16637446,
           16637813-16637911,16638408-16638803
          Length = 1749

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 270 TLQETTTLRRRDCLYQWRRNCL 335
           +L   T LR   CL++W  NCL
Sbjct: 630 SLSSATALRAPPCLFRWLENCL 651


>10_08_0854 +
           21086253-21086258,21086320-21086480,21087065-21087175,
           21087275-21087329,21087796-21087963,21088232-21090082,
           21090355-21090690
          Length = 895

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 228 GNEY-WCYTRHRPTSTLQETTTLRRRDCLYQWRRNCLVPILFSYYYCSYI 374
           GNE  W YT H   ST + T+T+ +     + RR CL PI+   +  SY+
Sbjct: 551 GNELNWIYTFH---STGKRTSTVGKTP---KDRRGCLPPIVGQMHVSSYL 594


>03_02_0085 -
           5539188-5539388,5539576-5539714,5540108-5540279,
           5541119-5541165,5541450-5541527,5542113-5542177,
           5543108-5543155,5543393-5543473,5543586-5543783
          Length = 342

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 114 CYKIS*RWG*SCRYKLSRSFRTHCC 188
           C +++ RWG S R K+ +  +  CC
Sbjct: 165 CQRVNARWGSSERRKVQKHLKLRCC 189


>06_03_1294 - 29080347-29081447
          Length = 366

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 204 PCAKPACCGNEYWCYTRHRPTSTLQETTTLRRR 302
           P   P+C G+ YW   ++  TS  Q+    RRR
Sbjct: 130 PIIPPSCPGDVYWTTYKNTNTSPPQQARHGRRR 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,769,596
Number of Sequences: 37544
Number of extensions: 126319
Number of successful extensions: 279
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)