Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16m14
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   1.8  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   2.4  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.5  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   5.5  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
 Frame = +2

Query: 401  DVINENNLITQIFXQFFYNL-----ICDKAYSLYTKRDM---CVPFVKECKKATIGLRQE 556
            DVI E   I+  +  FF        +C++    +    +   C+P +      T+GL++ 
Sbjct: 786  DVIQERPKISYDWFDFFLRCGVDFTVCNRYTHNFNNEHLDEACIPSLNPDTLRTLGLKEG 845

Query: 557  DHERVLSILNAQCNGFST 610
            D  RV++ +N + NG ST
Sbjct: 846  DIIRVMNHVN-ELNGVST 862


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 185 PTPAPDVDXIMCQSCKPANKI 247
           P P P VD   C+SC P+ ++
Sbjct: 582 PVPRPRVDLTQCKSCGPSYRL 602


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 210 SSTSGAGVGL*YVCKYCIMVLNWGTCLMNSS 118
           S+TSGA   L  V K  +M L  G CL+ +S
Sbjct: 537 SATSGAAGDLFSVSKNLMMTLTAGLCLITAS 567


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 64  QQHRQHTQCKKHFFDIFARRV 126
           Q H+ H   K HFF IF +++
Sbjct: 339 QHHQCHPLIKTHFFGIFGQKI 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,871
Number of Sequences: 5004
Number of extensions: 49861
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)