Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16m14
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0499 - 17820615-17822516,17823224-17823373,17823491-178235...    31   0.81 
06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047     28   5.7  
04_04_1120 + 31037811-31038813,31038903-31038991,31039094-310391...    28   5.7  
01_05_0333 + 21064693-21066006                                         27   9.9  
01_01_0155 - 1362710-1363267                                           27   9.9  

>08_02_0499 -
           17820615-17822516,17823224-17823373,17823491-17823568,
           17823948-17824061,17824145-17824297,17826928-17827071,
           17827162-17827516,17828574-17828741,17829522-17829751,
           17829916-17830049,17830686-17830749
          Length = 1163

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +2

Query: 83  HNVKNIFSIFLRDEFIKQVP---QFRTIMQYLQTYYNPTPAPDVDXIMCQSCKPANKI 247
           HN+     +F+  E IKQ P     +  MQ++ T+  PT  P +D ++  +  P + I
Sbjct: 457 HNISEAKEVFV--EGIKQAPCKALIKGFMQFMSTHGGPTEIPILDSVISNAVVPGSDI 512


>06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047
          Length = 396

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 174 HITIRRRHPTWTXSCVSRASPQT 242
           +I  RRRH T+T SC  R SP +
Sbjct: 21  YIPPRRRHGTFTSSCAFRLSPSS 43


>04_04_1120 +
           31037811-31038813,31038903-31038991,31039094-31039163,
           31039270-31039353,31039452-31039528,31039631-31039712,
           31039847-31039929,31040270-31040333,31040435-31040566,
           31040674-31040777,31040901-31040996,31041144-31041251
          Length = 663

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 604 ETVALRVQNTQHALVILLAQSDGCFFAFFDKWHAHVA 494
           E  A  +++     V+LL    GC+FA    WHA +A
Sbjct: 81  EAAAKALRSRSRRPVVLLVDRGGCYFA-LKTWHAQLA 116


>01_05_0333 + 21064693-21066006
          Length = 437

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 543 PMVAFLHSLTNGTHMSRFV 487
           P++ FLH+L N  H  RFV
Sbjct: 56  PLLGFLHNLDNADHPDRFV 74


>01_01_0155 - 1362710-1363267
          Length = 185

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 293 CSARTPSICICXRNIEFCLRAC 228
           CS   P IC C   +E C  AC
Sbjct: 126 CSRSLPPICRCADEVESCAAAC 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,314,353
Number of Sequences: 37544
Number of extensions: 309547
Number of successful extensions: 769
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)