Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16m06
(606 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L05093-1|AAC18781.1| 176|Homo sapiens ribosomal protein L18a pr... 244 1e-64
BC071920-1|AAH71920.1| 176|Homo sapiens ribosomal protein L18a ... 244 1e-64
BC066319-1|AAH66319.1| 176|Homo sapiens ribosomal protein L18a ... 244 1e-64
BC007512-1|AAH07512.1| 176|Homo sapiens ribosomal protein L18a ... 244 1e-64
AK222647-1|BAD96367.1| 176|Homo sapiens ribosomal protein L18a ... 244 1e-64
AC005796-1|AAC62828.1| 176|Homo sapiens ribosomal protein L18a ... 244 1e-64
AY779046-1|AAX47571.1| 136|Homo sapiens ribosomal protein L18a-... 190 4e-48
X80822-1|CAA56788.1| 140|Homo sapiens protein ( H.sapiens mRNA ... 158 2e-38
AB007175-1|BAA28596.1| 66|Homo sapiens ribosomal protein L18a ... 94 3e-19
>L05093-1|AAC18781.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 244 bits (598), Expect = 1e-64
Identities = 114/176 (64%), Positives = 133/176 (75%)
Frame = +2
Query: 26 MKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 205
MKA G LREY+V+GR LP+ PPLY+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 206 IVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 385
IV NFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRAR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120
Query: 386 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 553
AHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP RV + F KRP+T+F
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>BC071920-1|AAH71920.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 244 bits (598), Expect = 1e-64
Identities = 114/176 (64%), Positives = 133/176 (75%)
Frame = +2
Query: 26 MKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 205
MKA G LREY+V+GR LP+ PPLY+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 206 IVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 385
IV NFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRAR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120
Query: 386 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 553
AHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP RV + F KRP+T+F
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>BC066319-1|AAH66319.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 244 bits (598), Expect = 1e-64
Identities = 114/176 (64%), Positives = 133/176 (75%)
Frame = +2
Query: 26 MKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 205
MKA G LREY+V+GR LP+ PPLY+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 206 IVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 385
IV NFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRAR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120
Query: 386 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 553
AHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP RV + F KRP+T+F
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>BC007512-1|AAH07512.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 244 bits (598), Expect = 1e-64
Identities = 114/176 (64%), Positives = 133/176 (75%)
Frame = +2
Query: 26 MKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 205
MKA G LREY+V+GR LP+ PPLY+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 206 IVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 385
IV NFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRAR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120
Query: 386 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 553
AHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP RV + F KRP+T+F
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>AK222647-1|BAD96367.1| 176|Homo sapiens ribosomal protein L18a
variant protein.
Length = 176
Score = 244 bits (598), Expect = 1e-64
Identities = 114/176 (64%), Positives = 133/176 (75%)
Frame = +2
Query: 26 MKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 205
MKA G LREY+V+GR LP+ PPLY+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 206 IVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 385
IV NFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRAR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTAAGAVTQCYRDMGARHRAR 120
Query: 386 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 553
AHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP RV + F KRP+T+F
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>AC005796-1|AAC62828.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 244 bits (598), Expect = 1e-64
Identities = 114/176 (64%), Positives = 133/176 (75%)
Frame = +2
Query: 26 MKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 205
MKA G LREY+V+GR LP+ PPLY+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 206 IVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 385
IV NFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRAR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120
Query: 386 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 553
AHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP RV + F KRP+T+F
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>AY779046-1|AAX47571.1| 136|Homo sapiens ribosomal protein
L18a-like protein protein.
Length = 136
Score = 190 bits (462), Expect = 4e-48
Identities = 88/135 (65%), Positives = 103/135 (76%)
Frame = +2
Query: 26 MKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 205
MKA G LREY+V+GR+LP+ PPLY+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRRLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 206 IVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 385
V NFGIWLR +SRSG HNMYREYRDL+ GAVTQCYRDMGARHRAR
Sbjct: 61 TVYCGQVFEKSPLRVKNFGIWLRCDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120
Query: 386 AHSIQIIKVEVIKAA 430
AHSIQI+ VE I A+
Sbjct: 121 AHSIQIMMVEEIAAS 135
>X80822-1|CAA56788.1| 140|Homo sapiens protein ( H.sapiens mRNA for
ORF. ).
Length = 140
Score = 158 bits (383), Expect = 2e-38
Identities = 71/100 (71%), Positives = 80/100 (80%)
Frame = +2
Query: 254 NFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAA 433
NFGIWL Y+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQI+KVE I +
Sbjct: 41 NFGIWLSYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAVSK 100
Query: 434 CRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 553
CRRP VKQFH+S I+FPLP RV + F KRP+T+F
Sbjct: 101 CRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 140
>AB007175-1|BAA28596.1| 66|Homo sapiens ribosomal protein L18a
protein.
Length = 66
Score = 94.3 bits (224), Expect = 3e-19
Identities = 44/66 (66%), Positives = 51/66 (77%)
Frame = +2
Query: 356 RDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYK 535
RDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP RV + F K
Sbjct: 1 RDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTK 60
Query: 536 RPSTYF 553
RP+T+F
Sbjct: 61 RPNTFF 66
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,406,192
Number of Sequences: 237096
Number of extensions: 1929654
Number of successful extensions: 4528
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4528
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6410414940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -