Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16l21
         (178 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    24   2.3  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    24   2.3  
SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subun...    23   7.1  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    23   7.1  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    23   7.1  
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po...    23   7.1  

>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 22  VCMLHGLNMLKSFSEISVLCF 84
           VCMLH LN+LK    + +L F
Sbjct: 295 VCMLHLLNLLKK-ENVKMLAF 314


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 2   SALRKVQCACYT 37
           SALRK+ C CYT
Sbjct: 259 SALRKLLCKCYT 270


>SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subunit
           Rpc37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 242

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 92  PRMKHKTEISEKLFNMFXPCNMHTG 18
           P MKH  E ++KL     P N  +G
Sbjct: 141 PSMKHVNEYTQKLKAAAGPSNSSSG 165


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 3   AHCVKSSVHVTRXKHVKKFF*NFSFMFHSWSKSFFKN*YNKLFSFLIK*ET 155
           AH +   V V   ++  +FF  +   F+ +  S F N Y  L   L+  +T
Sbjct: 325 AHNLLPPVSVAE-RYANEFFLRYQSFFYFYPPSVFSNRYQILADGLVNSDT 374


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 25  CMLHGLNMLKSFSE 66
           CMLH  N LK+F E
Sbjct: 457 CMLHVQNNLKAFEE 470


>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 55  SFSEISVLCFIRGP 96
           SF +I  +CF +GP
Sbjct: 75  SFKDIDCICFTKGP 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 699,715
Number of Sequences: 5004
Number of extensions: 10367
Number of successful extensions: 23
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 39
effective length of database: 2,167,322
effective search space used: 41179118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)