Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16l13
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    29   0.50 
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    27   2.0  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   6.2  
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    26   6.2  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      26   6.2  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    26   6.2  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    25   8.2  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   8.2  

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +3

Query: 72  KSAAYDPLKAPNYF--EEFVHRFNKNYSSEVEKLRRFKIFQHNLNEIINKNQNDSA 233
           + A Y  L+APN+F  ++  H     + +  E  RR   F  +L E I K  +  A
Sbjct: 667 EKAGYHTLRAPNFFYSQQVKHYKQDLFPANSEAARRISFFAQSLAESIPKTSSIDA 722


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 5/114 (4%)
 Frame = +3

Query: 207  INKNQNDSAKYEINKFSDLSKDETIAKYTGLSLPTQTQNFCKVILL-DQPPGKGPLEFDW 383
            I+ +     +Y +    DL +DE + +  GL         C  +L  D    K  L  + 
Sbjct: 1973 IHGSDGKDYQYVLKGHEDLRQDERVMQLFGL---------CNTLLTTDSETFKRRLNIE- 2022

Query: 384  RRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHNELINLSEQQMI----DCD 533
             R   +    N G+ G      TL  L  +F  K N L+NL  + M+    DCD
Sbjct: 2023 -RYTVIPLSPNSGLLGWVPHSDTLHFLIKEFRSKRNILLNLEHRMMLQMAPDCD 2075


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +3

Query: 195 LNEIINKNQNDSAKYEINKFSDLSKDETIAKYTGLSLPTQTQNFCKVILLDQP 353
           L++++ K +    + E++    +S D+ I +   + LP+   N  K    D+P
Sbjct: 294 LSDLVEKQRRKKVEQEVSDKGWVSADKMINQRLSIFLPSALNNISKPESTDRP 346


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 221 LVFIDNFI*IVLENFESSQFFNFATIIFVESMNKFFKIIRRFQRIVG 81
           +V + N   I  E  E +    F    F+ESMN+ FK I   +++VG
Sbjct: 54  VVNVANSYAIPFEEDEKNASVWFLDHNFMESMNEMFKKINANEKLVG 100


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 272  VFGQIREFVYFIFGRIVLVFIDNF 201
            +FG I +FVY+ +   VLV  DNF
Sbjct: 1027 IFGVIGKFVYWAYVAPVLVSPDNF 1050


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 90  PLKAPNYFEEFVHRFNKNYSSEVEKLRRFKIFQHNLNEIIN 212
           P K  +YF +      KN SS+++      ++Q   NE+ N
Sbjct: 323 PSKIQDYFYDVHSLLLKNLSSKIKLCNHILMYQATFNEVKN 363


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 427 HIP*FFTLVTLLRRRQSNSRGPLPGGWSKSMT 332
           H+   + L   +R++ +  +GPLP GW   ++
Sbjct: 222 HLLEHYPLALSVRQQVAVEKGPLPAGWEMRLS 253


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 19/88 (21%), Positives = 37/88 (42%)
 Frame = +3

Query: 69   VKSAAYDPLKAPNYFEEFVHRFNKNYSSEVEKLRRFKIFQHNLNEIINKNQNDSAKYEIN 248
            +K A  D LK  N   + +  +NK  +   EK++  +  +  L + +   +++   Y+ N
Sbjct: 933  LKLALQDELKNRNLLMDDISSYNKQTTKLQEKIKWLERERSILIDELESYRSNQFNYQNN 992

Query: 249  KFSDLSKDETIAKYTGLSLPTQTQNFCK 332
               D ++ E   K     L     +F K
Sbjct: 993  LVQDKNELEERLKEIQKELEVYNNHFMK 1020


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,828,631
Number of Sequences: 5004
Number of extensions: 58033
Number of successful extensions: 207
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)