Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16l06
         (291 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce...    66   1e-12
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    25   2.2  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    25   3.0  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    24   5.2  
SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe...    24   5.2  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    24   5.2  
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb...    24   5.2  
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos...    23   6.9  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    23   9.1  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    23   9.1  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    23   9.1  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    23   9.1  

>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 56

 Score = 66.1 bits (154), Expect = 1e-12
 Identities = 30/54 (55%), Positives = 33/54 (61%)
 Frame = +3

Query: 78  MGHANIWYSHPXXXXXXXXXXXXXXNRHGLIRKYGLNICRQCFREYAHDIGFKK 239
           M H N+W+SHP               R GLIRKYGLNI RQ FREYA+DIGF K
Sbjct: 1   MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVK 54


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 172 RIKPCLLEQDRYDRDPCPYLRG*EYQI 92
           R  P LLE  +Y  D CP  +G  YQ+
Sbjct: 438 RSNPTLLEFMQYHIDHCPAEKGETYQL 464


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 101 FSPSQIRTRIPVIPILLQQAWLNPQV 178
           F PS I    P I + L  AWL+ Q+
Sbjct: 278 FRPSAIERNWPKIFVTLLSAWLSTQI 303


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = -1

Query: 285 FYLKVKFIIPTPFSPAS*ILCHEHTL*STVCICSNRTCGLSHACWSRIGMTGILVRIC 112
           F +K  +I P+ +S  + +LCH++   ++    +    G S     R+G+  +L  +C
Sbjct: 433 FIIKFNYIKPSIYSRFTDVLCHDYV--ASGAQLTQTVTGCSQQVARRMGLP-VLPLVC 487


>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 139

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +2

Query: 119 RTRIPVIPILLQQA-WLN--PQVRFEHMQTVLQRVCS*HRIQEAGL 247
           +T +  I  LL+ A  +N  PQ+RFEH +  L+RV   +  ++A L
Sbjct: 4   KTNLSNITTLLRSARCMNRMPQLRFEHTKGDLKRVNRSYETRDAML 49


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 134 PGSLSVSARVRIPNICVAHFKKLNCFSLTSNKLD 33
           PGS   S   +I +  VA   ++ C S + N+LD
Sbjct: 186 PGSAMRSLGDKISSTIVAQSARVPCMSWSGNELD 219


>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 405

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 119 RTRIPVIPILLQQAW 163
           +T + V+P LLQQ+W
Sbjct: 73  KTSVKVVPWLLQQSW 87


>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 211 SLKHCLHMFKPYLRIKP 161
           S+K C     PYL +KP
Sbjct: 54  SMKRCRETIAPYLELKP 70


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -2

Query: 101 IPNICVAHFKKLNCFSLTSNKLD 33
           +P     +F K+ CF     KLD
Sbjct: 680 VPGQAAVYFSKVACFCFEEQKLD 702


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -2

Query: 101 IPNICVAHFKKLNCFSLTSNKLD 33
           +P     +F K+ CF     KLD
Sbjct: 680 VPGQAAVYFSKVACFCFEEQKLD 702


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 187 FKPYLRIKPCLLEQDRYDRDPC 122
           F P+L +   LLE D  D D C
Sbjct: 511 FTPFLTVFSHLLEDDDLDADIC 532


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1115

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 47   SLARNNLIS*NGPRKYLVFSPSQIRTRIPVIPILLQQAWLNP 172
            SLAR +++   GP K L F    + T   V   L + + ++P
Sbjct: 918  SLARVSVLRGEGPNKGLPFIDDYVATDDKVTDYLTEYSGIHP 959


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,190,113
Number of Sequences: 5004
Number of extensions: 22125
Number of successful extensions: 51
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)