Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16l06
         (291 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal prote...    74   2e-14
U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...    29   0.42 
AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical...    28   0.97 
Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical pr...    28   1.3  
Z81505-1|CAB04122.1|  673|Caenorhabditis elegans Hypothetical pr...    27   1.7  
U97008-7|AAB52313.1|  385|Caenorhabditis elegans Temporarily ass...    27   1.7  
Z83114-4|CAB05554.4|  739|Caenorhabditis elegans Hypothetical pr...    25   9.1  
Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical pr...    25   9.1  
Z81510-3|CAB04163.1|  311|Caenorhabditis elegans Hypothetical pr...    25   9.1  
U21322-6|AAN65314.2|  669|Caenorhabditis elegans Hypothetical pr...    25   9.1  
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr...    25   9.1  
AL032627-12|CAB63357.1|  577|Caenorhabditis elegans Hypothetical...    25   9.1  
AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical ...    25   9.1  

>U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 29 protein.
          Length = 56

 Score = 73.7 bits (173), Expect = 2e-14
 Identities = 31/56 (55%), Positives = 36/56 (64%)
 Frame = +3

Query: 78  MGHANIWYSHPXXXXXXXXXXXXXXNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 245
           MG  N+W+SHP                HGLIRKYGL++CR+CFRE A DIGFKKLD
Sbjct: 1   MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKLD 56


>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 125 RIPVIPILLQQAWLNPQVRFEHMQTVLQRVCS*H 226
           RIP  P++L+Q WL    R E       R+CS H
Sbjct: 27  RIPKRPLILRQRWLTAIGRTEETVVSQLRICSAH 60


>AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical
           protein T15B7.16 protein.
          Length = 435

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 137 IPILLQQAWLNPQVRFEHMQTVLQRV 214
           + +L  Q W +P++RF+H+   LQ +
Sbjct: 80  LDLLFSQIWHDPRLRFDHLTNCLQNL 105


>Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical
           protein K10D6.1 protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +2

Query: 143 ILLQQAWLNPQVRFEHMQTVLQRVCS*HRIQE 238
           I + + WL+P ++F+H+    Q +   H++ E
Sbjct: 103 IYINEMWLDPALKFDHLNPCKQNLSVSHQVLE 134


>Z81505-1|CAB04122.1|  673|Caenorhabditis elegans Hypothetical
           protein F16A11.1 protein.
          Length = 673

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -1

Query: 162 HACWSRIGMTGILVRICEGENTKYLRG-PF*EIKL-FLANEQQIRYTFKMAN 13
           H  W    + G+L+ I EGE   YL G P  E +  FL+N Q     F  A+
Sbjct: 453 HENWQPGDVIGVLLNIPEGEVVFYLNGTPLKEPETEFLSNRQPSEGVFAAAS 504


>U97008-7|AAB52313.1|  385|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 293 protein.
          Length = 385

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 83  AHFKKLNCFSLTSNKLDTPSRWRT 12
           A F +LNC ++T+N+   P+ WRT
Sbjct: 255 AQFPRLNCDTITNNQCKDPN-WRT 277


>Z83114-4|CAB05554.4|  739|Caenorhabditis elegans Hypothetical
           protein K09B11.10 protein.
          Length = 739

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 21/59 (35%), Positives = 24/59 (40%)
 Frame = -1

Query: 288 FFYLKVKFIIPTPFSPAS*ILCHEHTL*STVCICSNRTCGLSHACWSRIGMTGILVRIC 112
           F +L V    P P+S          TL S V  CS RT  LS   W +   TG    IC
Sbjct: 306 FLFLAVDSFSPRPYS----------TLTSQVIPCSQRTTSLSLKYWMK---TGTQAEIC 351


>Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical
           protein T07D10.3 protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 171 RKYGLNICRQCFREYAHDIGFK 236
           R YGL +C  C R +  + GF+
Sbjct: 234 RAYGLYVCTTCQRRFRDNKGFQ 255


>Z81510-3|CAB04163.1|  311|Caenorhabditis elegans Hypothetical
           protein F21D9.4 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 4   FVQVRHLEGVSNLLLVSEKQFNFLKWATQIFGILTLADTDKDP 132
           F Q+ HL G +N        + F   A   +  + + DT+K+P
Sbjct: 12  FDQLIHLAGATNGWAHQPYDYRFYSQAYDGYWFVAMVDTEKEP 54


>U21322-6|AAN65314.2|  669|Caenorhabditis elegans Hypothetical
           protein K10D2.1b protein.
          Length = 669

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 89  KYLVFSPSQIRTRIPVIPILLQQAWLNPQVRFEH 190
           KYL+ +P+ +R+  P+I ++ +Q W + Q    H
Sbjct: 237 KYLM-TPAAVRSGKPLIKLIQRQTWKSDQFLAGH 269


>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical
           protein K10D2.1a protein.
          Length = 1223

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 89  KYLVFSPSQIRTRIPVIPILLQQAWLNPQVRFEH 190
           KYL+ +P+ +R+  P+I ++ +Q W + Q    H
Sbjct: 525 KYLM-TPAAVRSGKPLIKLIQRQTWKSDQFLAGH 557


>AL032627-12|CAB63357.1|  577|Caenorhabditis elegans Hypothetical
           protein Y41C4A.9 protein.
          Length = 577

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 35  LICCSLARNNLIS*N-GPRKYLVFSPSQIRTRIPVIPILLQQAWLNPQVRFEHMQT 199
           L+C  L    +++ + G   +L+ S +   T +    I+LQQ W N Q+ F H+ +
Sbjct: 282 LVCSPLGLRMILNGDDGNEAHLISSINM--TIVDRTDIMLQQNWENLQLIFSHLHS 335


>AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.10 protein.
          Length = 976

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 192 CRQCFREYAHDIGFKK 239
           C  CF+EYAH  G  +
Sbjct: 330 CAICFKEYAHQAGLSE 345


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,496,233
Number of Sequences: 27780
Number of extensions: 123554
Number of successful extensions: 273
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)