Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16l04
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom...    29   0.56 
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   3.0  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    27   3.9  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    27   3.9  
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos...    26   5.2  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    25   9.1  

>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +3

Query: 648 RWDWHQTPEHVIVSVYAKKY--DPVLSYVKVNPIRLNIKL 761
           R+DW QT   + + +YAKK   + V   ++ N +++ IKL
Sbjct: 185 RYDWSQTSFSLNIDIYAKKVKDEDVSLLMEKNTLKIEIKL 224


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
 Frame = -1

Query: 680 HVFWCLMPIPT-TLHCTSI*T--LFNPFMSSSSTAWLI*KGIEIC---GSFLAARPKF*- 522
           ++F  L+P+ + T  C SI    L N   +S S +      + IC    SF +A   F  
Sbjct: 231 YMFLELLPLQSITAACESILKDYLLNLVKTSESLSSQQMSCLRICCNSSSFWSAADSFKE 290

Query: 521 --TFMKNRAPRVICAQRLICLRTFKCCVTTTIFTTCSNSYISIFRDW 387
             +F+KN    V      +    +   +  + F TC N ++S+F +W
Sbjct: 291 VSSFLKNLLKNVTATPFEVSDMNW-AYIIASFFRTCLNDFVSVFPEW 336


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 106 ASWNTGCPGWWRHSS 62
           A+W  G PGW+ H++
Sbjct: 216 AAWEAGLPGWYSHNA 230


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 27   YVSNLKQI--YKFTDECRHHPGHPVFHDAYKGW 119
            +V  ++++  YKF +E R HP     HD ++GW
Sbjct: 1205 FVEKVEEVLGYKF-EEARDHPQFIKNHDDFEGW 1236


>SPAC631.01c |acp2||F-actin capping protein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 268

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -3

Query: 669 VSDANPNDTALYQHLNSL 616
           VSDA PND+AL   LN L
Sbjct: 249 VSDAQPNDSALRSVLNDL 266


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -2

Query: 436 PFLQLVPIATFPSSETGVFCSVFG*DCFNDSAMCVSKSTRGVSKGGLCNCGPATGALT 263
           PF +   +A  PSS   +  ++F     N S    + S  G+S G L +C P++ ++T
Sbjct: 114 PFYKNPVVANNPSSTFDMSTNLFNSKNANTS-FTNAFSNEGISPGFLRDCFPSSNSIT 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,304,452
Number of Sequences: 5004
Number of extensions: 72420
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)