Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16l04
         (770 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0325 + 7276650-7276770,7276979-7277055,7277146-7277188,727...    35   0.063
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389...    28   7.2  
06_03_0022 - 15536811-15536899,15537485-15537664,15537706-155379...    28   9.5  
06_01_1192 + 10249316-10249431,10251263-10251279,10251890-102537...    28   9.5  

>09_02_0325 +
           7276650-7276770,7276979-7277055,7277146-7277188,
           7277276-7277333,7277922-7277991,7278202-7278670,
           7278895-7278959
          Length = 300

 Score = 35.1 bits (77), Expect = 0.063
 Identities = 23/84 (27%), Positives = 40/84 (47%)
 Frame = +3

Query: 255 IIEVRAPVAGPQLQRPPFETPLVLLETHIAESLKQSQPNTEQKTPVSEDGNVAIGTSCKN 434
           IIE +  + G + + P     + L      +S +++ P+T    P SE     + ++  N
Sbjct: 142 IIEEQQRLGGVKSETPAAGASVTLPSDQFPDS-ERTDPSTP--APTSESPTQGVPSNRDN 198

Query: 435 GGCNTAFEGPQTNESLCTYHPGCP 506
           GG N A + PQ ++SL  + P  P
Sbjct: 199 GGQNEATKSPQRDDSLSRHEPLTP 222


>06_03_0099 + 16633928-16638213,16638299-16638386,16638823-16638950,
            16640008-16640278
          Length = 1590

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 324  LLETHIAESLK-QSQPNTEQKTPVSEDGNV-AIGTS 425
            L+++H  ESLK +S P   Q   +SE GNV  I TS
Sbjct: 1157 LMKSHTGESLKKESLPTGSQDLLISESGNVPQINTS 1192


>06_03_0022 -
           15536811-15536899,15537485-15537664,15537706-15537982,
           15538680-15538883,15539431-15539496,15539933-15539953,
           15541622-15541731,15543244-15544236,15544928-15544955,
           15545035-15545093,15545177-15545204,15545453-15545475,
           15545784-15545853,15546980-15547033,15547127-15547169,
           15548126-15548175
          Length = 764

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +3

Query: 369 NTEQKTPVSEDGNVAIGTSCKNGGCNTAFEGPQTNESLCTYH 494
           N  Q    + DG   +G  C+  GCN   EG QT   LC  H
Sbjct: 104 NMIQLNMCASDGRSVVGQRCQRLGCNNVVEG-QT--LLCKSH 142


>06_01_1192 +
           10249316-10249431,10251263-10251279,10251890-10253797,
           10253880-10254492,10255390-10255392,10257635-10257713,
           10258177-10258236,10258536-10258586,10258800-10258948,
           10260937-10260985
          Length = 1014

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 6   LKKISKIYVSNLKQIYKFTDECRHHPGHPV 95
           LK+IS  Y S +  + +   E R HP HPV
Sbjct: 809 LKEISLGYESKVAGLAQLEGEVRTHPNHPV 838


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,441,403
Number of Sequences: 37544
Number of extensions: 435017
Number of successful extensions: 913
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)