Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16l04
(770 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF192264-1|AAF18435.1| 321|Caenorhabditis elegans CHORD contain... 162 3e-40
AC006708-3|AAF60417.1| 321|Caenorhabditis elegans Chord protein... 162 3e-40
Z81592-1|CAB04725.1| 695|Caenorhabditis elegans Hypothetical pr... 32 0.39
Z83127-3|CAB05629.2| 291|Caenorhabditis elegans Hypothetical pr... 29 2.8
U40061-1|AAA81148.2| 573|Caenorhabditis elegans Hypothetical pr... 29 2.8
AF047651-5|AAC02722.2| 702|Caenorhabditis elegans Germline-enha... 29 2.8
Z73422-8|CAA97771.3| 240|Caenorhabditis elegans Hypothetical pr... 29 3.7
AF492698-1|AAM49750.1| 647|Caenorhabditis elegans SPE-9 protein. 29 3.7
Z92796-2|CAB07231.1| 347|Caenorhabditis elegans Hypothetical pr... 29 4.8
AC006816-3|AAK85510.3| 508|Caenorhabditis elegans Hypothetical ... 29 4.8
Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical p... 28 6.4
Z83123-2|CAB05606.1| 1014|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical p... 28 6.4
AF025467-10|AAB71040.2| 154|Caenorhabditis elegans He1 homologu... 28 6.4
>AF192264-1|AAF18435.1| 321|Caenorhabditis elegans CHORD containing
protein protein.
Length = 321
Score = 162 bits (393), Expect = 3e-40
Identities = 80/218 (36%), Positives = 120/218 (55%), Gaps = 5/218 (2%)
Frame = +3
Query: 63 DECRHHPGHPVFHDAYKGWSCCNKKSVDFTEFLNIKGCTLSKHSNVKPVEPVXXXXXXXX 242
+ C +HPG P FHDAYK W+CC+KKS DF ++N KGCT KHSN KPV+ V
Sbjct: 26 EACTYHPGGPYFHDAYKIWTCCDKKSTDFGTWMNYKGCTRGKHSNEKPVDIVKVAAVKEI 85
Query: 243 XXXXIIEVRAPVAGPQLQRPPFETPLVLLETHI-AESLKQSQPNTEQK----TPVSEDGN 407
+V + + + +E ++ E + E+K + ++ +
Sbjct: 86 RPEKEEDVIVWKGLNKSGKLDSKDATKRIEQNLNVEVTPGATAAIEKKLKEISEAAQSAD 145
Query: 408 VAIGTSCKNGGCNTAFEGPQTNESLCTYHPGCPIFHEGLKFWSCCQKRTTDFNTFLNQPG 587
+ IG C+N GC+T F+G + E+ C +HPG IFHEG+K+WSCC K+T++F FL Q G
Sbjct: 146 IQIGAPCRNNGCSTEFDGSKNKEN-CQHHPGAAIFHEGMKYWSCCNKKTSNFGAFLEQVG 204
Query: 588 CTTGAHKWVKESSNAGTVQCRWDWHQTPEHVIVSVYAK 701
CT+G HK+ +N + R DW + V ++VY +
Sbjct: 205 CTSGEHKF---RNNEIVSKFREDWFSSNGFVTINVYCR 239
Score = 80.6 bits (190), Expect = 1e-15
Identities = 28/60 (46%), Positives = 38/60 (63%)
Frame = +3
Query: 426 CKNGGCNTAFEGPQTNESLCTYHPGCPIFHEGLKFWSCCQKRTTDFNTFLNQPGCTTGAH 605
C + GC F+ + + CTYHPG P FH+ K W+CC K++TDF T++N GCT G H
Sbjct: 9 CYHKGCGLLFDPKENDNEACTYHPGGPYFHDAYKIWTCCDKKSTDFGTWMNYKGCTRGKH 68
Score = 61.7 bits (143), Expect = 6e-10
Identities = 23/46 (50%), Positives = 30/46 (65%)
Frame = +3
Query: 54 KFTDECRHHPGHPVFHDAYKGWSCCNKKSVDFTEFLNIKGCTLSKH 191
K + C+HHPG +FH+ K WSCCNKK+ +F FL GCT +H
Sbjct: 165 KNKENCQHHPGAAIFHEGMKYWSCCNKKTSNFGAFLEQVGCTSGEH 210
>AC006708-3|AAF60417.1| 321|Caenorhabditis elegans Chord protein
protein 1 protein.
Length = 321
Score = 162 bits (393), Expect = 3e-40
Identities = 80/218 (36%), Positives = 120/218 (55%), Gaps = 5/218 (2%)
Frame = +3
Query: 63 DECRHHPGHPVFHDAYKGWSCCNKKSVDFTEFLNIKGCTLSKHSNVKPVEPVXXXXXXXX 242
+ C +HPG P FHDAYK W+CC+KKS DF ++N KGCT KHSN KPV+ V
Sbjct: 26 EACTYHPGGPYFHDAYKIWTCCDKKSTDFGTWMNYKGCTRGKHSNEKPVDIVKVAAVKEI 85
Query: 243 XXXXIIEVRAPVAGPQLQRPPFETPLVLLETHI-AESLKQSQPNTEQK----TPVSEDGN 407
+V + + + +E ++ E + E+K + ++ +
Sbjct: 86 RPEKEEDVIVWKGLNKSGKLDSKDATKRIEQNLNVEVTPGATAAIEKKLKEISEAAQSAD 145
Query: 408 VAIGTSCKNGGCNTAFEGPQTNESLCTYHPGCPIFHEGLKFWSCCQKRTTDFNTFLNQPG 587
+ IG C+N GC+T F+G + E+ C +HPG IFHEG+K+WSCC K+T++F FL Q G
Sbjct: 146 IQIGAPCRNNGCSTEFDGSKNKEN-CQHHPGAAIFHEGMKYWSCCNKKTSNFGAFLEQVG 204
Query: 588 CTTGAHKWVKESSNAGTVQCRWDWHQTPEHVIVSVYAK 701
CT+G HK+ +N + R DW + V ++VY +
Sbjct: 205 CTSGEHKF---RNNEIVSKFREDWFSSNGFVTINVYCR 239
Score = 80.6 bits (190), Expect = 1e-15
Identities = 28/60 (46%), Positives = 38/60 (63%)
Frame = +3
Query: 426 CKNGGCNTAFEGPQTNESLCTYHPGCPIFHEGLKFWSCCQKRTTDFNTFLNQPGCTTGAH 605
C + GC F+ + + CTYHPG P FH+ K W+CC K++TDF T++N GCT G H
Sbjct: 9 CYHKGCGLLFDPKENDNEACTYHPGGPYFHDAYKIWTCCDKKSTDFGTWMNYKGCTRGKH 68
Score = 61.7 bits (143), Expect = 6e-10
Identities = 23/46 (50%), Positives = 30/46 (65%)
Frame = +3
Query: 54 KFTDECRHHPGHPVFHDAYKGWSCCNKKSVDFTEFLNIKGCTLSKH 191
K + C+HHPG +FH+ K WSCCNKK+ +F FL GCT +H
Sbjct: 165 KNKENCQHHPGAAIFHEGMKYWSCCNKKTSNFGAFLEQVGCTSGEH 210
>Z81592-1|CAB04725.1| 695|Caenorhabditis elegans Hypothetical
protein T16G1.1 protein.
Length = 695
Score = 32.3 bits (70), Expect = 0.39
Identities = 34/128 (26%), Positives = 47/128 (36%), Gaps = 7/128 (5%)
Frame = +3
Query: 267 RAPVAGPQLQRPPFETPLVL--LETHIAESL-KQSQPNTEQKTPVSEDGNV--AIGTSCK 431
R P+ P Q PF+ P+V +E+ I SL S PN +K+ ED + G C
Sbjct: 299 RNPIV-PFNQAGPFQGPIVSPKVESMIENSLGSTSMPNPNRKSKYDEDDDYEDGDGNGCN 357
Query: 432 NGGCNTAFEGPQTNESLCTYHPGCPIFHEGLKFWSCCQKR--TTDFNTFLNQPGCTTGAH 605
GC+ G S C G C +R + N N C G
Sbjct: 358 GNGCSYGRRGGGNQNSGGGCEMNCRRNGGGNNDGCGCNRRGGNNNGNRGGNSQECGNGGC 417
Query: 606 KWVKESSN 629
W ++N
Sbjct: 418 PWNGNNNN 425
>Z83127-3|CAB05629.2| 291|Caenorhabditis elegans Hypothetical
protein T23F6.3 protein.
Length = 291
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 564 NTFLNQPGCTTGAHKWVKESSNAGTVQCRWDWHQTPE 674
N +N GC T +W + S+ CR W TP+
Sbjct: 224 NRCMNVIGCKTCVQRWHRSSTQPSCPLCRRRWIATPD 260
>U40061-1|AAA81148.2| 573|Caenorhabditis elegans Hypothetical
protein ZK563.2 protein.
Length = 573
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -1
Query: 476 LICLRTFKCCVTTTIFTTCSNSYISIFRDWSFLLCIWLRLFQ*FS-YVC 333
+I + CC + +C I +WSF L IW+R Q + ++C
Sbjct: 477 IILIIAITCCFICVLQNSCKEFLPKILHNWSF-LPIWMRSLQYYDPFMC 524
>AF047651-5|AAC02722.2| 702|Caenorhabditis elegans
Germline-enhanced at-hook proteinprotein 1 protein.
Length = 702
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 276 VAGPQLQRPP-FETPLVLLETHIAESLKQSQPNTEQKTP 389
+ P++ RPP +TP L T + +K+ QP EQ P
Sbjct: 594 ITTPRILRPPTLKTPYSLPRTAVIPVMKKKQPEIEQVQP 632
>Z73422-8|CAA97771.3| 240|Caenorhabditis elegans Hypothetical
protein B0564.1a protein.
Length = 240
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = -2
Query: 448 VLQPPFLQLVPIATFPSSETGVFCSVFG*DCFNDSAMCVSKSTRGVSKGGLCNCGPATGA 269
+L+ F ++ FP S+ +FC V D N A CV+ ++ ++ G+ G A+ A
Sbjct: 97 LLEKAFESVILTEAFPRSQLDIFCEVIQGDGSN-LAACVNATSLALADAGIPMKGIASAA 155
>AF492698-1|AAM49750.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Frame = +3
Query: 339 IAESLKQSQPNTEQKTPVSEDGNVAIGTSCKNGGCNTAFEGPQ--TNESLCTYHPG---- 500
I + L++ PN +KTP + ++A+ +N N E P+ +N C + G
Sbjct: 8 IIDFLEKDAPNDIEKTPNYNEXSLAVK---RNKNFNPCLENPKICSNRGKCLHENGNFYC 64
Query: 501 -CPIFHEG 521
CP+ H G
Sbjct: 65 ICPVTHYG 72
>Z92796-2|CAB07231.1| 347|Caenorhabditis elegans Hypothetical
protein H25K10.3 protein.
Length = 347
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -1
Query: 473 ICLRTFKCCVTTTIFTTCS--NSYI-SIFRDWSFLLCIWLRL 357
+C FK CVTT I C+ N+Y+ ++F W + I++ L
Sbjct: 60 LCTPFFKLCVTTAIIDICTLLNNYLGAMFPKWGWGTGIYIFL 101
>AC006816-3|AAK85510.3| 508|Caenorhabditis elegans Hypothetical
protein Y71D11A.5 protein.
Length = 508
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 684 VSVYAKKYDPVLSYVKVNPIRLNIKL 761
+ +Y YDP L+Y +NP + N+ L
Sbjct: 112 IYIYETWYDPALNYAFMNPCKYNLSL 137
>Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical
protein C25G4.10 protein.
Length = 1208
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 612 VKESSNAGTVQCRWDWHQTPEHVIVSVYAKK-YDPVLSYVKVNPIRLNIKL 761
V+ ++ G V WD+ T ++ +VY +K +D + K+ I+ NI+L
Sbjct: 1003 VRIKASEGKVNIEWDYPLTKDYKYFAVYYRKAHDDHEDWHKLKTIQQNIEL 1053
>Z83123-2|CAB05606.1| 1014|Caenorhabditis elegans Hypothetical
protein T04A11.3 protein.
Length = 1014
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 612 VKESSNAGTVQCRWDWHQTPEHVIVSVYAKK-YDPVLSYVKVNPIRLNIKL 761
V+ ++ G V WD+ T ++ +VY +K +D + K+ I+ NI+L
Sbjct: 809 VRIKASEGKVNIEWDYPLTKDYKYFAVYYRKAHDDHEDWHKLKTIQQNIEL 859
>Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical
protein C25G4.10 protein.
Length = 1208
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 612 VKESSNAGTVQCRWDWHQTPEHVIVSVYAKK-YDPVLSYVKVNPIRLNIKL 761
V+ ++ G V WD+ T ++ +VY +K +D + K+ I+ NI+L
Sbjct: 1003 VRIKASEGKVNIEWDYPLTKDYKYFAVYYRKAHDDHEDWHKLKTIQQNIEL 1053
>AF025467-10|AAB71040.2| 154|Caenorhabditis elegans He1 homologue
protein 1 protein.
Length = 154
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +3
Query: 387 PVSEDGNVAIGTSCKNGGCNTAFEGPQTNESLCTYHPGCPI 509
P + + K GG + + PQTN CTY CP+
Sbjct: 66 PSKDTDKLKTSVRAKVGG-SAMVDFPQTNSDACTYGVKCPV 105
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,218,331
Number of Sequences: 27780
Number of extensions: 412559
Number of successful extensions: 1061
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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